View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19264_low_39 (Length: 238)
Name: NF19264_low_39
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19264_low_39 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 21286005 - 21286100
Alignment:
| Q |
143 |
cactttgaattgattcactcatttagtgaatagattgacatcttcaaaaatgaaatataggtttatatgaagaattatttgattagaatgaataac |
238 |
Q |
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| T |
21286005 |
cactttgaattgattcactcatttagtaaatagattgacatcttcaaaaatgaaatataggtttatatgaagaattatttgattagaatgaataac |
21286100 |
T |
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Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 21285879 - 21285976
Alignment:
| Q |
17 |
agagagaatgagaaaatgttttcaatatatacttgtaaaatatgtgggaatatatatcagaaagaatgacaatgctacatgttggtgagttttagaac |
114 |
Q |
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| T |
21285879 |
agagagaatgagaaaatgttttcaatatatacttgtaaaatatgtgggaatatatataagaaagaatgacaatgctgcatgttggtgagttttagaac |
21285976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 8422222 - 8422163
Alignment:
| Q |
157 |
tcactcatttagtgaatagattgacatcttcaaaaatgaaatataggtttatatgaagaa |
216 |
Q |
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| T |
8422222 |
tcactcatttagtgaatagattcacaagttcaaaaatgaattctagattcatatgaagaa |
8422163 |
T |
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