View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19264_low_4 (Length: 635)
Name: NF19264_low_4
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19264_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 613; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 1 - 617
Target Start/End: Original strand, 47061622 - 47062238
Alignment:
| Q |
1 |
tcatcataggaatttggttaagcttattggtttttgtatagaaggttcaaagaagcttcttgtttatgaatttgtcagcaaagggtctcttgcaaatatc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47061622 |
tcatcataggaatttggttaagcttattggtttttgtatagaaggttcaaagaagcttcttgtttatgaatttgtcagcaaagggtctcttgcaaatatc |
47061721 |
T |
|
| Q |
101 |
ctctttgaaggggaagtgagactatcttggaaagatagaatgaaacttgcattggacgtggctaaaggaatattatatctacacgaagagtgtgaagtcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47061722 |
ctctttgaaggggaagtgagactatcttggaaagatagaatgaaacttgcattggacgtggctaaaggaatattatatctacacgaagagtgtgaagtcc |
47061821 |
T |
|
| Q |
201 |
aaattatccattgtaatataaatcctcaaaatatacttatggatgaagcatggaatgcaaaaatatctgattttggattggcaagactttcaaagagggg |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47061822 |
aaattatccattgtaatataaatcctcaaaatatacttatggatgaagcatggaatgcaaaaatatctgattttggattggcaagactttcaaagagggg |
47061921 |
T |
|
| Q |
301 |
tcattcaagaactaaaatagaggatgatggcacagtcaagtatttcgcacctgaacggcagaaggaggatgcatcagtatcggtaaaagctgacatttac |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47061922 |
tcattcaagaactaaaatagaggatgatggcacagtcaagtatttggcacctgaacggcagaaggaggatgcatcagtatcggtaaaagctgacatttac |
47062021 |
T |
|
| Q |
401 |
agttttggtgtggtattattggaaattatttgccgcagaagaagtatagagatgaataatattcactcgcccggtgaaattcttctttccagttgggcat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47062022 |
agttttggtgtggtattattggaaattatttgccgcagaagaagtatagagatgaataatattcactcgcccggtgaaattcttctttccagttgggcat |
47062121 |
T |
|
| Q |
501 |
atcaatgttttgaagcagggcagttaaacaagcttatcagacatgatgagaaagatgtggattggaagatattggaaagaatggtgaaagtcgggttgtg |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47062122 |
atcaatgttttgaagcagggcagttaaacaagcttatcagacatgatgagaaagatgtggattggaagatattggaaagaatggtgaaagtcgggttgtg |
47062221 |
T |
|
| Q |
601 |
gtgtgtgcaagaccgac |
617 |
Q |
| |
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||||||||||||||||| |
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| T |
47062222 |
gtgtgtgcaagaccgac |
47062238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 614
Target Start/End: Complemental strand, 47080135 - 47079525
Alignment:
| Q |
1 |
tcatcataggaatttggttaagcttattggtttttgtatagaaggttcaaagaagcttcttgtttatgaatttgtcagcaaagggtctcttgcaaatatc |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| || |
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|
| T |
47080135 |
tcatcataggaatttggttaagcttgttggtttttgtatagaaggatcaaagaagctccttgtttatgaatttgtcagcaaaggatctcttgcaaatctc |
47080036 |
T |
|
| Q |
101 |
ctctttgaaggggaagtgagactatcttggaaagatagaatgaaacttgcattggacgtggctaaaggaatattatatctacacgaagagtgtgaagtcc |
200 |
Q |
| |
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||||||||||||||| |||||||||||||||||| | |||||||||||||||||| ||||||| ||| | || |||||||||||||||||||| |||| |
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| T |
47080035 |
ctctttgaaggggaaacgagactatcttggaaagacaaaatgaaacttgcattggatgtggctagaggtcttttgtatctacacgaagagtgtgatgtcc |
47079936 |
T |
|
| Q |
201 |
aaattatccattgtaatataaatcctcaaaatatacttatggatgaagcatggaatgcaaaaatatctgattttggattggcaagactttcaaagagggg |
300 |
Q |
| |
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||| |||||||| ||||||||||||| ||| |||||||| || |||||||||| ||||||||| ||||||||||||| ||||| | ||||||||||| |
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| T |
47079935 |
gaatcatccattgcaatataaatcctcgaaaaatacttatagacgaagcatggaccgcaaaaataactgattttggattcgcaaggttatcaaagagggg |
47079836 |
T |
|
| Q |
301 |
tcattcaagaactaaaatagaggatgatggcacagtcaagtatttcgcacctgaacggcagaaggaggatgcatcagtatcggtaaaagctgacatttac |
400 |
Q |
| |
|
||||||||||| ||||||| | ||||| ||| || ||| || ||||||||| ||||||||||||| ||||||||||| |||||||||||| |||| |
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|
| T |
47079835 |
ccattcaagaaccaaaataggg---gatggtacaagcaggtacttggcacctgaatggcagaaggaggacgcatcagtatcagtaaaagctgacgtttat |
47079739 |
T |
|
| Q |
401 |
agttttggtgtggtattattggaaattatttgccgcagaagaagtatagagatgaataatattcactcgcccggtgaaattcttctttccagttgggcat |
500 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||||||||| |||||||||||| |||||||||||| |||| ||| |||||| | |||||||| |||| | |
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| T |
47079738 |
agttttggggtggtactattggagattatttgccgcaaaagaagtatagatatgaataatatttcctcggccgatgaaatccctctttccacctgggtgt |
47079639 |
T |
|
| Q |
501 |
atcaatgttttgaagcagggcagttaaacaagcttatcagacatgatgagaaagatgtggattggaagatattggaaagaatggtgaaagtcgggttgtg |
600 |
Q |
| |
|
|||||||||||| | |||| || || |||||||| |||| |||| |||| || ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47079638 |
atcaatgttttgcatcaggacaattgaacaagctaatcacacataatgaaaatgatatggattggaagatattggaaagaatggtgaaagtcgggttgtg |
47079539 |
T |
|
| Q |
601 |
gtgtgtgcaagacc |
614 |
Q |
| |
|
|||||||||||||| |
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|
| T |
47079538 |
gtgtgtgcaagacc |
47079525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 530 - 588
Target Start/End: Complemental strand, 47052424 - 47052366
Alignment:
| Q |
530 |
aagcttatcagacatgatgagaaagatgtggattggaagatattggaaagaatggtgaa |
588 |
Q |
| |
|
|||||| |||||||| |||||||| | |||||||||||| |||||||||||||| |||| |
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|
| T |
47052424 |
aagcttttcagacataatgagaaatacgtggattggaaggtattggaaagaatgttgaa |
47052366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 3080486 - 3080518
Alignment:
| Q |
253 |
gaatgcaaaaatatctgattttggattggcaag |
285 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
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| T |
3080486 |
gaatccaaaaatatctgattttggattggcaag |
3080518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 3094923 - 3094955
Alignment:
| Q |
253 |
gaatgcaaaaatatctgattttggattggcaag |
285 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
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|
| T |
3094923 |
gaatccaaaaatatctgattttggattggcaag |
3094955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 4548045 - 4548013
Alignment:
| Q |
253 |
gaatgcaaaaatatctgattttggattggcaag |
285 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |
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|
| T |
4548045 |
gaatccaaaaatatctgattttggattggcaag |
4548013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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