View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19264_low_40 (Length: 237)
Name: NF19264_low_40
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19264_low_40 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 36305181 - 36304945
Alignment:
| Q |
1 |
aatgaattaccaaattgttgggaaatggtatgttgtgttgttacaacatttttagtattatgagtttgagtggtagcttcatcattggaactccaaatgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36305181 |
aatgaattaccaaattgttgggaaatggtgtgttgtgttgttacaacatttttagtattatgagtatgagtggtagcttcatcattggaactccaaatgc |
36305082 |
T |
|
| Q |
101 |
tggcaaggaattcatccatgttgagggaactaaagctctttccactcttgcattggaactcatctagggtaagtgagagtattgaggtttgcttgcttgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36305081 |
tggcaaggaattcatccatgttgagggaactaaagctctttccactcttgcattggaactcatctagggtaagtgagagtattgaggtttgcttgcttgg |
36304982 |
T |
|
| Q |
201 |
ttgagaaaatgtagcttcttgttcttgcaatggaacc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36304981 |
ttgagaaaatgtagcttcttgttcttgcaatggaacc |
36304945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 180
Target Start/End: Complemental strand, 36320733 - 36320552
Alignment:
| Q |
2 |
atgaattaccaaattgttgggaaatggtatgttgtgttgttacaacatttttagtattat---gagtttgagtggtagcttcatcattggaactccaaat |
98 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| || |||| ||||| ||| |||||| | ||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
36320733 |
atgaattaccaagctgttgggaaatggtgtgttctgctgttgcaacactttcagtattgttgtgagtttgagcagtatcttcatcattggaactccaaat |
36320634 |
T |
|
| Q |
99 |
gctggcaaggaattcatccatgttgagggaactaaagctctttccactcttgcattggaactcatctagggtaagtgagagt |
180 |
Q |
| |
|
||| || ||||| ||||||||||||||||| |||||| |||| || | ||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
36320633 |
gctagctaggaactcatccatgttgagggagctaaagttcttatcattattgcattggaaatcatccagggtgagtgagagt |
36320552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 35566723 - 35566638
Alignment:
| Q |
149 |
tgcattggaactcatctagggtaagtgagagtattgaggtttgcttgcttggttgagaaaatgtag---cttcttgttcttgcaat |
231 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||||| ||||| |||| ||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
35566723 |
tgcattggaaatcatcaagggtgagtgagagtgttgagttttgattgctcggttgagaaaatgtagattcttcttgttcttgcaat |
35566638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University