View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19264_low_41 (Length: 210)
Name: NF19264_low_41
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19264_low_41 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 37 - 196
Target Start/End: Complemental strand, 44614857 - 44614698
Alignment:
| Q |
37 |
agatccttgatttgtacttcaatctgattctcttttaactcgagtgctttgacagatttgagattgtcctcagtttggttttcaatttgctgcatttttc |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44614857 |
agatccttgatttgtacttcaatctgattctcttttaactcgagtgctttgacagatttgagattgtcctcagtttggttttcaatttgctgcatttttc |
44614758 |
T |
|
| Q |
137 |
cttcaaattcctctacctttgtttcaaacattttcactcgacctttaaattcctcctctt |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44614757 |
cttcaaattcctctacctttgtttcaaacattttcactcgacctttaaattcctcctctt |
44614698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 44624067 - 44623886
Alignment:
| Q |
18 |
attattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaactcgagtgctttgacagatttgagattgtcctcagtttggttt |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
44624067 |
attattcagctttgacttaagatccttgatttgtacttcaatctgattctcttttaattcgagtgctttgacagatttgagattgtcctcaacttgattt |
44623968 |
T |
|
| Q |
118 |
tcaatttgctgcatttttccttcaaattcctctacctttgtttcaaa---cattttcactcgacctttaaattcctcctctt |
196 |
Q |
| |
|
|||| ||||||||||||| |||| |||| |||| |||||| |||||| | ||||||| || ||||||||||||| |||| |
|
|
| T |
44623967 |
tcaaattgctgcatttttacttcgaatttctcttcctttgcttcaaaaagtactttcacttgaactttaaattcctcttctt |
44623886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 39152636 - 39152579
Alignment:
| Q |
19 |
ttattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaact |
76 |
Q |
| |
|
||||| ||||||||||||||||||||| || |||||||| ||| ||||||||||||| |
|
|
| T |
39152636 |
ttatttagctttgactcaagatccttggcttctacttcaagctgcttctcttttaact |
39152579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 39468392 - 39468343
Alignment:
| Q |
27 |
ctttgactcaagatccttgatttgtacttcaatctgattctcttttaact |
76 |
Q |
| |
|
|||||||| ||| ||||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
39468392 |
ctttgactgaagttccttgacttgtccttcaatctgcttctcttttaact |
39468343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 45342112 - 45342049
Alignment:
| Q |
18 |
attattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaactcgagt |
81 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| |||| |
|
|
| T |
45342112 |
attattcagctttgactcaaggtccttgatttgcacttcaaactgattctcttttaactggagt |
45342049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 16113357 - 16113303
Alignment:
| Q |
22 |
ttcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaact |
76 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
16113357 |
ttcagctttgactcaagctccttgacttgtacttcaatctgcttctcttttaact |
16113303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University