View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19264_low_5 (Length: 583)

Name: NF19264_low_5
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19264_low_5
NF19264_low_5
[»] chr3 (26 HSPs)
chr3 (20-573)||(6848475-6849034)
chr3 (18-573)||(6526893-6527453)
chr3 (435-545)||(6558582-6558691)
chr3 (18-116)||(6558136-6558234)
chr3 (370-482)||(6938784-6938892)
chr3 (194-291)||(6796556-6796653)
chr3 (88-193)||(6943522-6943627)
chr3 (409-481)||(6796826-6796898)
chr3 (69-193)||(6939151-6939278)
chr3 (419-505)||(6800093-6800178)
chr3 (218-291)||(6549802-6549875)
chr3 (319-372)||(6558494-6558547)
chr3 (516-573)||(6938685-6938742)
chr3 (88-193)||(6940325-6940430)
chr3 (69-125)||(6789004-6789060)
chr3 (222-272)||(6558370-6558420)
chr3 (497-573)||(6796932-6797008)
chr3 (94-156)||(7745837-7745899)
chr3 (489-545)||(6789191-6789247)
chr3 (162-196)||(6558236-6558270)
chr3 (427-461)||(8593966-8594000)
chr3 (164-193)||(6549633-6549662)
chr3 (370-415)||(6550000-6550045)
chr3 (501-542)||(7745471-7745512)
chr3 (507-555)||(8451720-8451767)
chr3 (500-536)||(8594045-8594081)
[»] scaffold0425 (1 HSPs)
scaffold0425 (18-573)||(11600-12139)
[»] chr1 (2 HSPs)
chr1 (507-545)||(7982062-7982100)
chr1 (85-121)||(17793259-17793295)


Alignment Details
Target: chr3 (Bit Score: 500; Significance: 0; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 20 - 573
Target Start/End: Original strand, 6848475 - 6849034
Alignment:
Q  20 catgtggccttttaccgtgattttcattttattaatatttttaattgttaagtgataaaaag-ttgaatgacatgccactttgttgtttaagggaatttt 118  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  6848475 catgtggccttttaccgtgattttcattttatttatatttttaattgttaagtgataaaaaaattgaatgacatgccactttgttgtttaagggaatttt 6848574  T
Q  119 ggtggattcaatgacatccaacttgagaaaaaaccactttcctcatggtggatgggagcttccatggtgtttggaacaaccaatgactcttacaatgatt 218  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6848575 ggtggattcaatgacatccaacttgagaaaaaaccactgtcctcatggtggatgggatcttccatggtgtttggaacaaccaatgactcttacaatgatt 6848674  T
Q  219 cttactaagactggactgcattttacatgctgccaaatgtaacacagaaccattctgcaacgcaccactccaaggaaactaggaga-----tacaaagtt 313  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||    
T  6848675 cttactaagactggactgcattttatatgctgccaaatgtaacacagaaccattctgcaacgcaccactccaaggaaactaggagcatcagtacaaagtt 6848774  T
Q  314 aaccaactccaagtggaataaacatgtgtttcagacagagaatatcattgttgagatgtgatgtcaagactcaggcatccacttcaacatcttactcttt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6848775 aaccaactccaagtggaataaacatgtgtttcagacagagaatattattgttgagatgtgatgtcaagactcaggcatccacttcaacatcttactcttt 6848874  T
Q  414 gtttgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaacactacttttcattgcagtacttctgattgtaattcat 513  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6848875 gtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaacactacttttcattgcagtacttctgattgtaattcat 6848974  T
Q  514 tactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttctgtg 573  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6848975 tactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttctgtg 6849034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 18 - 573
Target Start/End: Original strand, 6526893 - 6527453
Alignment:
Q  18 gtcatgtggccttttaccgtgattttcattttattaatatttttaattgttaagtgataaaaagttgaatgacatgccactttgttgtttaagggaattt 117  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6526893 gtcatgtggccttttaccgtgattttcattttatttatatttttaattgttaagtgataaaaaattgaatgacatgccactttgttgtttaagggaattt 6526992  T
Q  118 tggtggattcaatgacatccaacttgagaaaaaaccactttcctcatggtggatgggagcttccatggtgtttggaacaaccaatgactcttacaatgat 217  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  6526993 tggtggattcaatgacatccaacttgagaaaaaaccactgtcctcatggtggatgagagcttccatggtgtttggaacaaccaatgactcttccaatgat 6527092  T
Q  218 tcttactaagactggactgcattttacatgctgccaaatgtaacacagaaccattctgcaacgcaccactccaaggaaactaggaga-----tacaaagt 312  Q
    | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||      ||||||||    
T  6527093 ttttactaagactggactgcattttatatgctgccaaatgtaacacagaaccattctgcaatgcaccactccaaggaaattaggagcatcagtacaaagt 6527192  T
Q  313 taaccaactccaagtggaataaacatgtgtttcagacagagaatatcattgttgagatgtgatgtcaagactcaggcatccacttcaacatcttactctt 412  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6527193 taaccaactccaagtggaataaacatgtgtttcagacgaagaatatcattgttgagatgtgatgtcaagactcaggcatcgacttcaacatcttactctt 6527292  T
Q  413 tgtttgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaacactacttttcattgcagtacttctgattgtaattca 512  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6527293 tgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaacactacttttcattgcagtacttctgattgtaattca 6527392  T
Q  513 ttactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttctgtg 573  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6527393 ttactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttctgtg 6527453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 435 - 545
Target Start/End: Original strand, 6558582 - 6558691
Alignment:
Q  435 caccggaagttgacttgtcaatttagtgaaattcaataaaacactacttttcattgcagtacttctgattgtaattcattactttttctcagtttgtgaa 534  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||    
T  6558582 caccagaagttgacttgtcaatttagtgaaattcaataaaactctacttt-cattgctgtacttctgattgtaattcaatactttttctcagtttgtgaa 6558680  T
Q  535 taagtttatct 545  Q
    || ||||||||    
T  6558681 taggtttatct 6558691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 6558136 - 6558234
Alignment:
Q  18 gtcatgtggccttttaccgtgattttcattttattaatatttttaattgttaagtgataaaaagttgaatgacatgccactttgttgtttaagggaatt 116  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||  |||||||||    
T  6558136 gtcatgtggccttttaccgtgattttcattttatttatatttttaattgttaagtgataaaaaattgaatgacatgccaccttgttgtcaaagggaatt 6558234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 370 - 482
Target Start/End: Complemental strand, 6938892 - 6938784
Alignment:
Q  370 tgtgatgtcaagactcaggcatccacttcaacatcttactctttgtttgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattca 469  Q
    |||||||||| |||||||||| | |||||||| ||||||||||||| |||||||| ||||||||||||||||| | |||||||||||||    |||||||    
T  6938892 tgtgatgtcaggactcaggcagctacttcaacttcttactctttgtatgtccttcgtagttcatacaccggaattcgacttgtcaattt----aaattca 6938797  T
Q  470 ataaaacactact 482  Q
    |||||||||||||    
T  6938796 ataaaacactact 6938784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 194 - 291
Target Start/End: Original strand, 6796556 - 6796653
Alignment:
Q  194 acaaccaatgactcttacaatgattcttactaagactggactgcattttacatgctgccaaatgtaacacagaaccattctgcaacgcaccactccaa 291  Q
    |||| ||||||||| ||||||||||||||| ||||  ||||||||||||| |||||||||||||||||||||||||||||| ||| || | |||||||    
T  6796556 acaatcaatgactcatacaatgattcttacaaagataggactgcattttatatgctgccaaatgtaacacagaaccattctccaaggcgctactccaa 6796653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 88 - 193
Target Start/End: Complemental strand, 6943627 - 6943522
Alignment:
Q  88 gacatgccactttgttgtttaagggaattttggtggattcaatgacatccaacttgagaaaaaaccactttcctcatggtggatgggagcttccatggtg 187  Q
    ||||| |||||||||||   ||||||||||||||| |||||||| ||||||||| ||||||||||| || ||||||||||||| ||||||||| ||| ||    
T  6943627 gacataccactttgttgccaaagggaattttggtgcattcaatggcatccaactcgagaaaaaacctctgtcctcatggtggacgggagcttcgatgatg 6943528  T
Q  188 tttgga 193  Q
    ||||||    
T  6943527 tttgga 6943522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 409 - 481
Target Start/End: Original strand, 6796826 - 6796898
Alignment:
Q  409 tctttgtttgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaacactac 481  Q
    ||||||| ||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  6796826 tctttgtatgttcttcctagttcatacaccggaagttgacgtgtcagtttagtgaaattcaataaaacactac 6796898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 69 - 193
Target Start/End: Complemental strand, 6939278 - 6939151
Alignment:
Q  69 aagtgataaaaagttgaatgacatgc---cactttgttgtttaagggaattttggtggattcaatgacatccaacttgagaaaaaaccactttcctcatg 165  Q
    ||||||| |||| |||||||||||||   ||||||||| |  || |||||||||  | |||||||| ||||||||| ||||||||||| || ||||| ||    
T  6939278 aagtgatcaaaaattgaatgacatgctgccactttgttttcaaatggaattttgtcgaattcaatggcatccaactcgagaaaaaacctctgtcctcgtg 6939179  T
Q  166 gtggatgggagcttccatggtgtttgga 193  Q
    |||| |||||||||||||||||||||||    
T  6939178 gtgggtgggagcttccatggtgtttgga 6939151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 419 - 505
Target Start/End: Original strand, 6800093 - 6800178
Alignment:
Q  419 tccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaacactacttttcattgcagtacttctgattg 505  Q
    |||||||||||||||| || |||| |||||||| |||||||| |||||||||||||||||||  |||||||||| |||| |||||||    
T  6800093 tccttcctagttcatagactggaaattgacttgccaatttagggaaattcaataaaacacta-atttcattgcaatactactgattg 6800178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 218 - 291
Target Start/End: Original strand, 6549802 - 6549875
Alignment:
Q  218 tcttactaagactggactgcattttacatgctgccaaatgtaacacagaaccattctgcaacgcaccactccaa 291  Q
    |||||| ||||||||| | | ||||| |||||||||||||||||||||||||||||||||| |||| |||||||    
T  6549802 tcttacaaagactggaattcgttttatatgctgccaaatgtaacacagaaccattctgcaaggcactactccaa 6549875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 319 - 372
Target Start/End: Original strand, 6558494 - 6558547
Alignment:
Q  319 actccaagtggaataaacatgtgtttcagacagagaatatcattgttgagatgt 372  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  6558494 actccaagtggaataaatatgtgtttcagacagagaatatcattgtagagatgt 6558547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 516 - 573
Target Start/End: Complemental strand, 6938742 - 6938685
Alignment:
Q  516 ctttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttctgtg 573  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||    
T  6938742 ctttttctcagtttgtgaataagtttatctatctgcataattagaaggttctgctgtg 6938685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 88 - 193
Target Start/End: Complemental strand, 6940430 - 6940325
Alignment:
Q  88 gacatgccactttgttgtttaagggaattttggtggattcaatgacatccaacttgagaaaaaaccactttcctcatggtggatgggagcttccatggtg 187  Q
    ||||| |||||||||||   ||||||||||||||| |||||||| ||||||||| ||||||||||| || |||||||||| ||  |||||||| | | ||    
T  6940430 gacataccactttgttgccaaagggaattttggtgcattcaatggcatccaactcgagaaaaaacctctgtcctcatggtagacaggagcttcgacgatg 6940331  T
Q  188 tttgga 193  Q
    ||||||    
T  6940330 tttgga 6940325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 6789004 - 6789060
Alignment:
Q  69 aagtgataaaaagttgaatgacatgccactttgttgtttaagggaattttggtggat 125  Q
    |||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  6789004 aagtcataaaaaattgaatgacatgccactttgttgttaaagggaattttggtggat 6789060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 6558370 - 6558420
Alignment:
Q  222 actaagactggactgcattttacatgctgccaaatgtaacacagaaccatt 272  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  6558370 actaagactggaccgcattttatatgctgccaaatgtaacacagaaccatt 6558420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 497 - 573
Target Start/End: Original strand, 6796932 - 6797008
Alignment:
Q  497 ttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttctgtg 573  Q
    ||||| ||| || ||||| ||||||||||||||||||||||| |||||| ||||||| ||| ||||||||| |||||    
T  6796932 ttctggttggaaatcatttctttttctcagtttgtgaataagcttatctatctgcataattcgaaggttctgctgtg 6797008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 7745899 - 7745837
Alignment:
Q  94 ccactttgttgtttaagggaattttggtggattcaatgacatccaacttgagaaaaaaccact 156  Q
    ||||||||||||  ||||||||||||||| |||||||| |||| |||||||||||||| ||||    
T  7745899 ccactttgttgtcaaagggaattttggtgaattcaatggcatctaacttgagaaaaaatcact 7745837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 489 - 545
Target Start/End: Original strand, 6789191 - 6789247
Alignment:
Q  489 tgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatct 545  Q
    |||||||||||||||| |||||||||| ||| ||||||||||||||||  |||||||    
T  6789191 tgcagtacttctgattttaattcattaatttctctcagtttgtgaatatttttatct 6789247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 196
Target Start/End: Original strand, 6558236 - 6558270
Alignment:
Q  162 catggtggatgggagcttccatggtgtttggaaca 196  Q
    ||||||| |||||||||||||||||||||||||||    
T  6558236 catggtgaatgggagcttccatggtgtttggaaca 6558270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 461
Target Start/End: Original strand, 8593966 - 8594000
Alignment:
Q  427 agttcatacaccggaagttgacttgtcaatttagt 461  Q
    ||||||||||| |||||||||||||||||||||||    
T  8593966 agttcatacactggaagttgacttgtcaatttagt 8594000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 193
Target Start/End: Original strand, 6549633 - 6549662
Alignment:
Q  164 tggtggatgggagcttccatggtgtttgga 193  Q
    ||||||||||||||||||||||||||||||    
T  6549633 tggtggatgggagcttccatggtgtttgga 6549662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 415
Target Start/End: Original strand, 6550000 - 6550045
Alignment:
Q  370 tgtgatgtcaagactcaggcatccacttcaacatcttactctttgt 415  Q
    |||||||||| ||||||||||||||||||||  ||| |||||||||    
T  6550000 tgtgatgtcaggactcaggcatccacttcaaagtctgactctttgt 6550045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 542
Target Start/End: Complemental strand, 7745512 - 7745471
Alignment:
Q  501 gattgtaattcattactttttctcagtttgtgaataagttta 542  Q
    ||||| |||||||||||||||| ||||||||||||| |||||    
T  7745512 gattgaaattcattactttttcacagtttgtgaataggttta 7745471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 555
Target Start/End: Complemental strand, 8451767 - 8451720
Alignment:
Q  507 aattcattactttttctcagtttgtgaataagtttatctttctgcatca 555  Q
    |||||||||||||| ||||||||||||||| || ||||| |||||||||    
T  8451767 aattcattactttt-ctcagtttgtgaataggtctatctatctgcatca 8451720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 500 - 536
Target Start/End: Original strand, 8594045 - 8594081
Alignment:
Q  500 tgattgtaattcattactttttctcagtttgtgaata 536  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  8594045 tgattgaaattcattattttttctcagtttgtgaata 8594081  T

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Target: scaffold0425 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 573
Target Start/End: Original strand, 11600 - 12139
Alignment:
Q  18 gtcatgtggccttttaccgtgattttcattttattaatatttttaattgttaagtgataaaaagttgaatgacatgccactttgttgtttaagggaattt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11600 gtcatgtggccttttaccgtgattttcattttattaatatttttaattgttaagtgataaaaaattgaatgacatgccactttgttgtttaagggaattt 11699  T
Q  118 tggtggattcaatgacatccaacttgagaaaaaaccactttcctcatggtggatgggagcttccatggtgtttggaacaaccaatgactcttacaatgat 217  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11700 tggtggattcaatgacatccaacttgagaaaaaaccactgtcctcatggtggatgggagcttccatggtgtttggaacaaccaatgactcttacaatgat 11799  T
Q  218 tcttactaagactggactgcattttacatgctgccaaatgtaacacagaaccattctgcaacgcaccactccaaggaaactaggag-----atacaaagt 312  Q
    |||||| |||||| ||||||| |||| |||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||      ||||||||    
T  11800 tcttaccaagact-gactgcactttatatgctgccaaatgta--acagaaccattctgcaatgcaccactccaaggaaactaggagcatcagtacaaagt 11896  T
Q  313 taaccaactccaagtggaataaacatgtgtttcagacagagaatatcattgttgagatgtgatgtcaagactcaggcatccacttcaacatcttactctt 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||           || |||      ||    
T  11897 taaccaactccaagtggaataaacatgtgtttcagacagagaatatcattgttgagatgtgatgtc-agacgaag-----------aatatc------tt 11978  T
Q  413 tgtttgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaacactacttttcattgcagtacttctgattgtaattca 512  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11979 tgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaacactactattcattgcagtacttctgattgtaattca 12078  T
Q  513 ttactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttctgtg 573  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12079 ttactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttctgtg 12139  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 545
Target Start/End: Original strand, 7982062 - 7982100
Alignment:
Q  507 aattcattactttttctcagtttgtgaataagtttatct 545  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  7982062 aattcattactttttctcagtttgtgaatatgtttatct 7982100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 17793295 - 17793259
Alignment:
Q  85 aatgacatgccactttgttgtttaagggaattttggt 121  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  17793295 aatgacataccactttgttgttaaagggaattttggt 17793259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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