View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19264_low_7 (Length: 540)

Name: NF19264_low_7
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19264_low_7
NF19264_low_7
[»] scaffold0098 (2 HSPs)
scaffold0098 (302-437)||(52264-52399)
scaffold0098 (435-500)||(52496-52561)
[»] chr4 (8 HSPs)
chr4 (302-437)||(31414076-31414210)
chr4 (334-414)||(27860987-27861067)
chr4 (302-386)||(17869644-17869728)
chr4 (302-386)||(41327702-41327786)
chr4 (302-384)||(44095304-44095386)
chr4 (307-401)||(24484788-24484882)
chr4 (301-383)||(27339715-27339797)
chr4 (302-346)||(44096013-44096057)
[»] chr7 (6 HSPs)
chr7 (302-437)||(25675680-25675815)
chr7 (301-366)||(25674892-25674957)
chr7 (302-388)||(48627763-48627849)
chr7 (302-370)||(44390723-44390791)
chr7 (302-367)||(26582628-26582693)
chr7 (301-401)||(35752325-35752424)
[»] chr2 (15 HSPs)
chr2 (302-437)||(4854473-4854608)
chr2 (302-366)||(4855344-4855408)
chr2 (302-401)||(42330923-42331022)
chr2 (301-370)||(38823854-38823923)
chr2 (308-401)||(16870585-16870678)
chr2 (301-370)||(39062900-39062969)
chr2 (302-370)||(38823220-38823288)
chr2 (302-386)||(40321147-40321231)
chr2 (302-401)||(34229044-34229143)
chr2 (308-370)||(35029862-35029924)
chr2 (309-370)||(39064589-39064650)
chr2 (302-359)||(40320241-40320298)
chr2 (302-370)||(39062219-39062287)
chr2 (310-370)||(42062993-42063053)
chr2 (302-386)||(42149600-42149684)
[»] chr1 (3 HSPs)
chr1 (301-386)||(41459423-41459508)
chr1 (302-401)||(7338768-7338867)
chr1 (352-388)||(41459349-41459385)
[»] chr6 (2 HSPs)
chr6 (233-295)||(32211057-32211119)
chr6 (1-69)||(32210676-32210743)
[»] chr8 (5 HSPs)
chr8 (302-401)||(40030500-40030599)
chr8 (302-401)||(42578709-42578808)
chr8 (302-370)||(11519350-11519418)
chr8 (302-370)||(6462616-6462684)
chr8 (302-370)||(20169014-20169082)
[»] chr5 (3 HSPs)
chr5 (308-401)||(33530669-33530762)
chr5 (302-426)||(2398198-2398321)
chr5 (305-369)||(2639715-2639779)
[»] chr3 (6 HSPs)
chr3 (302-388)||(40613055-40613141)
chr3 (302-366)||(44637769-44637833)
chr3 (302-401)||(3799832-3799930)
chr3 (302-400)||(34330088-34330186)
chr3 (310-383)||(10991857-10991930)
chr3 (347-403)||(11607921-11607977)


Alignment Details
Target: scaffold0098 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 302 - 437
Target Start/End: Original strand, 52264 - 52399
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaatgattgagattaaaa 401  Q
    ||||||||||||||||||||| |||||  || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52264 gagttcatctttgctccatttttgtttcctccatttactccttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaatggttgagattaaaa 52363  T
Q  402 tgcctcaccacatgctatctccactataacacactg 437  Q
    || ||||||||||||| |||||||||||||||||||    
T  52364 tgtctcaccacatgctctctccactataacacactg 52399  T

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Target: scaffold0098; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 435 - 500
Target Start/End: Original strand, 52496 - 52561
Alignment:
Q  435 ctgtttttatccgctcatcttttctcctctttttgtgtcattcctttcattttcaaattcaaacaa 500  Q
    ||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  52496 ctgtttttacccgttcatcttttctcctctttttatgtcattcctttcattttcaaattcaaacaa 52561  T

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Target: chr4 (Bit Score: 96; Significance: 8e-47; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 302 - 437
Target Start/End: Original strand, 31414076 - 31414210
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaatgattgagattaaaa 401  Q
    |||||||||||||||||||||||||||| || |||| ||| |||||||||||||||||||||||| |||||||||| |||| ||||| ||||||||||||    
T  31414076 gagttcatctttgctccatttatgtttgctccatttgctcattttcaatgcatagatgtgtgacacgtgttaaaaa-aaattcaatggttgagattaaaa 31414174  T
Q  402 tgcctcaccacatgctatctccactataacacactg 437  Q
    |||||||||||||||| |||||||||||||||||||    
T  31414175 tgcctcaccacatgctctctccactataacacactg 31414210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 334 - 414
Target Start/End: Original strand, 27860987 - 27861067
Alignment:
Q  334 atttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaatgattgagattaaaatgcctcaccacat 414  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  27860987 atttactccttttcaatgcatagatgtgtgacatgtgttaaaaacaaatacaatggttgagattaaaatgcctcaccacat 27861067  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 17869644 - 17869728
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaa 386  Q
    ||||||||||||||||||||||   ||| || |||||||| |||||||||||||||||  |||||  || |||||| ||||||||    
T  17869644 gagttcatctttgctccatttagccttgctccatttactccttttcaatgcatagatgcatgacacatggtaaaaataaatccaa 17869728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 41327702 - 41327786
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaa 386  Q
    ||||||| |||| |||||||||  |||| |||||||| || ||||||||  ||||||||||||||| || |||||| ||||||||    
T  41327702 gagttcaactttactccatttagctttgctcaatttattccttttcaataaatagatgtgtgacatatggtaaaaataaatccaa 41327786  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 384
Target Start/End: Original strand, 44095304 - 44095386
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatcc 384  Q
    |||||||||||||||||||||   |||  || |||||||| |||||||||   ||||||||||||||||| ||||| ||||||    
T  44095304 gagttcatctttgctccattttgatttcctccatttactccttttcaatgtgcagatgtgtgacatgtgtcaaaaataaatcc 44095386  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 401
Target Start/End: Original strand, 24484788 - 24484882
Alignment:
Q  307 catctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaatgattgagattaaaa 401  Q
    ||||||||||||||||| | ||  ||||||||  || ||||||   ||||||||||||||||||  ||||| ||| ||||||  |||||||||||    
T  24484788 catctttgctccatttaagattcctcaatttatcctatttcaagttatagatgtgtgacatgtggaaaaaataaaaccaatggctgagattaaaa 24484882  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 383
Target Start/End: Original strand, 27339715 - 27339797
Alignment:
Q  301 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatc 383  Q
    |||||||||||||||||||||||   || ||| |||||||| ||| ||||||||||||   ||| ||||| |||||| |||||    
T  27339715 cgagttcatctttgctccatttagtattcttccatttactcatttccaatgcatagatagatgatatgtggtaaaaataaatc 27339797  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 44096057 - 44096013
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactcttttt 346  Q
    |||| ||||||| ||| ||||||| ||||||||||||||||||||    
T  44096057 gagtccatctttactctatttatgattgttcaatttactcttttt 44096013  T

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Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 302 - 437
Target Start/End: Complemental strand, 25675815 - 25675680
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaatgattgagattaaaa 401  Q
    |||||||||||||||||||||||||| | || |||||||| ||||||||| |||||||||||||||||| |||||| |||| ||||| ||||||||||||    
T  25675815 gagttcatctttgctccatttatgttggctccatttactccttttcaatgtatagatgtgtgacatgtggtaaaaataaattcaatggttgagattaaaa 25675716  T
Q  402 tgcctcaccacatgctatctccactataacacactg 437  Q
    |||||||| ||||||| |||  ||||||||||||||    
T  25675715 tgcctcactacatgctctctttactataacacactg 25675680  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 301 - 366
Target Start/End: Original strand, 25674892 - 25674957
Alignment:
Q  301 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgaca 366  Q
    |||||||||||||||||||||| |||||| ||||||||||| ||||||||| ||||||||||||||    
T  25674892 cgagttcatctttgctccatttgtgtttgctcaatttactccttttcaatgtatagatgtgtgaca 25674957  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 388
Target Start/End: Original strand, 48627763 - 48627849
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaatg 388  Q
    ||||||||||||||||||||||   ||| || |||||||| |||| |||||||  |||| |||||||||  ||||||||||| ||||    
T  48627763 gagttcatctttgctccatttaccattgctccatttactccttttgaatgcatgaatgtttgacatgtggaaaaaacaaatctaatg 48627849  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 370
Target Start/End: Complemental strand, 44390791 - 44390723
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtg 370  Q
    |||| ||||||||||||||||||| ||| || |||||||| |||| ||| || |||| |||||||||||    
T  44390791 gagtgcatctttgctccatttatgattgctccatttactcctttttaattcacagatatgtgacatgtg 44390723  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 367
Target Start/End: Complemental strand, 26582693 - 26582628
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacat 367  Q
    |||||||||||| |||||||||| |||| || |||||||| |||| |||  | |||||||||||||    
T  26582693 gagttcatctttactccatttatatttgctccatttactccttttaaatttacagatgtgtgacat 26582628  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 401
Target Start/End: Original strand, 35752325 - 35752424
Alignment:
Q  301 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaatgattgagattaaa 400  Q
    ||||||||| ||||||||||||  ||||| ||||||||  |  ||||||| ||||||||| |||||||||  ||||| |||  ||||| ||| |||||||    
T  35752325 cgagttcatgtttgctccattttggtttgctcaatttatcccatttcaat-catagatgtatgacatgtggcaaaaataaaatcaatggttgtgattaaa 35752423  T

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Target: chr2 (Bit Score: 76; Significance: 7e-35; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 302 - 437
Target Start/End: Original strand, 4854473 - 4854608
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaatgattgagattaaaa 401  Q
    ||||||||||||||||||||||||||   || |||||||| ||||||||| ||||||||||||||| || |||||| |||| ||||| ||||||||||||    
T  4854473 gagttcatctttgctccatttatgttgactccatttactccttttcaatgtatagatgtgtgacatatggtaaaaataaattcaatggttgagattaaaa 4854572  T
Q  402 tgcctcaccacatgctatctccactataacacactg 437  Q
    |||||||| ||||||| |||  ||||||||||||||    
T  4854573 tgcctcactacatgctctctttactataacacactg 4854608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 4855408 - 4855344
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgaca 366  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||    
T  4855408 gagttcatctttgctccatttatgtttgctcaatttactccttttcaatgtatagatgtgtgaca 4855344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 302 - 401
Target Start/End: Complemental strand, 42331022 - 42330923
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaatgattgagattaaaa 401  Q
    ||||||||||||||||||||||   ||| |||||||| |  ||||||||||||||||||||||||  ||  ||||| |||||||| | ||||||||||||    
T  42331022 gagttcatctttgctccatttactcttgctcaatttatttcttttcaatgcatagatgtgtgacacttgacaaaaataaatccaaaggttgagattaaaa 42330923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 370
Target Start/End: Complemental strand, 38823923 - 38823854
Alignment:
Q  301 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtg 370  Q
    ||||||||||||| || |||||| || |  ||||||||||||||||||||| ||||||||||||||||||    
T  38823923 cgagttcatctttccttcatttaagtctcctcaatttactctttttcaatgtatagatgtgtgacatgtg 38823854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 401
Target Start/End: Original strand, 16870585 - 16870678
Alignment:
Q  308 atctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaatgattgagattaaaa 401  Q
    ||||||||||||||||   ||  |||||||| || ||||||||||||||||||||||||  |  |||||| |||||||| | ||||||||||||    
T  16870585 atctttgctccatttagccttcctcaatttattccttttcaatgcatagatgtgtgacacatagtaaaaataaatccaaaggttgagattaaaa 16870678  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 370
Target Start/End: Complemental strand, 39062969 - 39062900
Alignment:
Q  301 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtg 370  Q
    ||||| |||||||| |||||||||||||||||||||||| |  ||||||  ||||||||| |||||||||    
T  39062969 cgagtccatctttgttccatttatgtttgttcaatttacccaatttcaagtcatagatgtatgacatgtg 39062900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 370
Target Start/End: Original strand, 38823220 - 38823288
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtg 370  Q
    ||||||||||||||||||||||| |||| || |||||||| |||| |||  | ||||||||||||||||    
T  38823220 gagttcatctttgctccatttatatttgctccatttactccttttgaatttacagatgtgtgacatgtg 38823288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 40321231 - 40321147
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaa 386  Q
    ||||||||||||||||||||||   ||| || |||||||| |||||||||||||||||  |||||  || |||||| ||||||||    
T  40321231 gagttcatctttgctccatttagccttgctccatttactccttttcaatgcatagatgcatgacacatggtaaaaataaatccaa 40321147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 401
Target Start/End: Complemental strand, 34229143 - 34229044
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaatgattgagattaaaa 401  Q
    |||| ||||||||||||||||| | ||  ||||||||| |  ||| ||  |||||||||||||||||||  ||||| ||| ||||||  |||||||||||    
T  34229143 gagtccatctttgctccatttaagattcctcaatttaccccattttaagtcatagatgtgtgacatgtggaaaaaataaaaccaatggctgagattaaaa 34229044  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 370
Target Start/End: Complemental strand, 35029924 - 35029862
Alignment:
Q  308 atctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtg 370  Q
    |||||||||||||||| ||||  ||||||||| |  ||||||  |||||||||||||||||||    
T  35029924 atctttgctccatttaggtttcctcaatttaccccatttcaagtcatagatgtgtgacatgtg 35029862  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 370
Target Start/End: Complemental strand, 39064650 - 39064589
Alignment:
Q  309 tctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtg 370  Q
    ||||||||||||||||||||  |||||||| || |||||| |  || |||||||||||||||    
T  39064650 tctttgctccatttatgtttcctcaatttattccttttcattttattgatgtgtgacatgtg 39064589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 359
Target Start/End: Original strand, 40320241 - 40320298
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatg 359  Q
    ||||||||||||||||||||||   ||| || ||||| || |||||||||||||||||    
T  40320241 gagttcatctttgctccatttagccttgctccatttaatccttttcaatgcatagatg 40320298  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 370
Target Start/End: Original strand, 39062219 - 39062287
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtg 370  Q
    ||||| |||||||||||||||  ||||||||||||||  |  ||||||  ||||||||| |||||||||    
T  39062219 gagtttatctttgctccattttggtttgttcaatttatcccatttcaagtcatagatgtatgacatgtg 39062287  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 370
Target Start/End: Complemental strand, 42063053 - 42062993
Alignment:
Q  310 ctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtg 370  Q
    ||||||| |||||| || || || ||| |||| |||||||||||||||||| |||||||||    
T  42063053 ctttgcttcatttaggtatgctccattcactcattttcaatgcatagatgtttgacatgtg 42062993  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 42149684 - 42149600
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaa 386  Q
    ||||||||||||||||||||||   ||  || |||||||| |||||||||||| |||   |||||| ||| ||||| ||||||||    
T  42149684 gagttcatctttgctccatttaacattcctccatttactccttttcaatgcatggataaatgacatatgtcaaaaataaatccaa 42149600  T

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Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 301 - 386
Target Start/End: Complemental strand, 41459508 - 41459423
Alignment:
Q  301 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaa 386  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||  | ||||||||||||    
T  41459508 cgagttcatctttgctccatttatgtttgttcaatttactcattttcaatacatagatgtgtgacacgtggaacaaacaaatccaa 41459423  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 401
Target Start/End: Complemental strand, 7338867 - 7338768
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaatgattgagattaaaa 401  Q
    |||| ||||||||||||||||||||||  |||||||||||  ||||||  ||||||||||| |||||||  ||||| |||  ||||| ||| ||||||||    
T  7338867 gagtccatctttgctccatttatgtttcctcaatttactccatttcaagtcatagatgtgtaacatgtggaaaaaataaaatcaatggttgtgattaaaa 7338768  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 388
Target Start/End: Original strand, 41459349 - 41459385
Alignment:
Q  352 catagatgtgtgacatgtgttaaaaacaaatccaatg 388  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  41459349 catagatgtgtgacatgtggtaaaaataaatccaatg 41459385  T

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Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 32211057 - 32211119
Alignment:
Q  233 ataatgtacataatttgttttaatctttattgtttccacatgatttgttgtaagcaatgacct 295  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32211057 ataatgtacataatttgttctaatctttattgtttccacatgatttgttgtaagcaatgacct 32211119  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 32210676 - 32210743
Alignment:
Q  1 aatattgctggaattggcaagactagaaagaaagnnnnnnngaattggtaaaagatagttccttttcct 69  Q
    ||||||||| |||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  32210676 aatattgctagaattggcaagactagaaagaaa-aaaaatagaattggtaaaagatagttccttttcct 32210743  T

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Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 302 - 401
Target Start/End: Complemental strand, 40030599 - 40030500
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaatgattgagattaaaa 401  Q
    ||||||||||||||||||||||   ||| |||||||| || ||||||||||||||||||||||||  ||  ||||| |||||||| |  |||||||||||    
T  40030599 gagttcatctttgctccatttactcttgctcaatttattccttttcaatgcatagatgtgtgacacttgacaaaaataaatccaaaggctgagattaaaa 40030500  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 401
Target Start/End: Original strand, 42578709 - 42578808
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaatgattgagattaaaa 401  Q
    |||| ||||||||||||||||||||||| ||||||||| |  ||||||  ||||||||| |||||||||  ||||| |||  |||||  |||||||||||    
T  42578709 gagtccatctttgctccatttatgtttgctcaatttaccccatttcaagtcatagatgtatgacatgtggcaaaaataaaatcaatggctgagattaaaa 42578808  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 370
Target Start/End: Original strand, 11519350 - 11519418
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtg 370  Q
    |||||||||||||||| ||||| |||| |||||||||| |  ||||||  |||||||||||||||||||    
T  11519350 gagttcatctttgctcaatttaggtttcttcaatttaccccatttcaaatcatagatgtgtgacatgtg 11519418  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 370
Target Start/End: Complemental strand, 6462684 - 6462616
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtg 370  Q
    |||| ||||||||||||||||||||||| ||||||||| |  ||||||  | ||||||| |||||||||    
T  6462684 gagtccatctttgctccatttatgtttgctcaatttaccccatttcaagtcctagatgtatgacatgtg 6462616  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 370
Target Start/End: Complemental strand, 20169082 - 20169014
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtg 370  Q
    |||| ||||||||||||||||||| ||| || |||||||| |||| ||| || |||| |||||||||||    
T  20169082 gagtgcatctttgctccatttatgattgctccatttactcctttttaattcacagatatgtgacatgtg 20169014  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 401
Target Start/End: Complemental strand, 33530762 - 33530669
Alignment:
Q  308 atctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaatgattgagattaaaa 401  Q
    ||||||||||||||||   ||  |||||||| || ||||||||||||||||||||||||  |  |||||| |||||||| | ||||||||||||    
T  33530762 atctttgctccatttagccttcctcaatttattccttttcaatgcatagatgtgtgacacatagtaaaaataaatccaaaggttgagattaaaa 33530669  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 426
Target Start/End: Complemental strand, 2398321 - 2398198
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaatgattgagattaaaa 401  Q
    ||||||||||||||||||||| |||||| |  ||||||||||||| | |  | |||||||||||||||| ||||| |||||| || |  |||||||||||    
T  2398321 gagttcatctttgctccatttttgtttgcttcatttactcttttt-agtttacagatgtgtgacatgtggtaaaatcaaatctaaaggctgagattaaaa 2398223  T
Q  402 tgcctcaccacatgctatctccact 426  Q
      | ||| |||||||| ||| ||||    
T  2398222 gacatcatcacatgctttcttcact 2398198  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 2639715 - 2639779
Alignment:
Q  305 ttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgt 369  Q
    |||||||||||||||||||| |||| ||||||||| |  ||||||   |||||||||| ||||||    
T  2639715 ttcatctttgctccatttatttttgctcaatttaccccatttcaagttatagatgtgtaacatgt 2639779  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 388
Target Start/End: Original strand, 40613055 - 40613141
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaatg 388  Q
    ||||||||||||||||||||||   ||  || ||||| || |||| ||||||||||||| |||||||||  ||||||||||| ||||    
T  40613055 gagttcatctttgctccatttaaccttactccatttaatccttttgaatgcatagatgtttgacatgtggaaaaaacaaatctaatg 40613141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 44637833 - 44637769
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgaca 366  Q
    ||||||||||||||||||| || || || || |||||||| |||||||  |||||||||||||||    
T  44637833 gagttcatctttgctccatctaagtatgctccatttactccttttcaagacatagatgtgtgaca 44637769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 401
Target Start/End: Original strand, 3799832 - 3799930
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaatgattgagattaaaa 401  Q
    |||| ||||||||||||||||| | ||| ||||||||  |  ||| |||||||||||||||||||  || |||||| ||||| || | ||||||||||||    
T  3799832 gagtccatctttgctccattta-gcttgctcaatttatcccattttaatgcatagatgtgtgacacatggtaaaaataaatctaaaggttgagattaaaa 3799930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 400
Target Start/End: Complemental strand, 34330186 - 34330088
Alignment:
Q  302 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaatgattgagattaaa 400  Q
    |||||||||||||||||||||| || || |||||| |  |  || ||| |||||||||| |||||||||  ||| |||||| ||| | |||||||||||    
T  34330186 gagttcatctttgctccatttaggtgtgctcaattgatcccattccaaggcatagatgtatgacatgtggcaaagacaaattcaagggttgagattaaa 34330088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 383
Target Start/End: Complemental strand, 10991930 - 10991857
Alignment:
Q  310 ctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacatgtgttaaaaacaaatc 383  Q
    |||| |||||||||  |||| |||| |||||| ||| ||||| ||||||||||||||||||  ||||| |||||    
T  10991930 ctttactccatttaactttgctcaagttactcctttccaatgtatagatgtgtgacatgtggcaaaaataaatc 10991857  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 11607921 - 11607977
Alignment:
Q  347 caatgcatagatgtgtgacatgtgttaaaaacaaatccaatgattgagattaaaatg 403  Q
    |||| |||| |||| |||||||||  ||||| ||||||||||||||||||| |||||    
T  11607921 caattcatatatgtctgacatgtggcaaaaataaatccaatgattgagatttaaatg 11607977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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