View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19264_low_8 (Length: 520)
Name: NF19264_low_8
Description: NF19264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19264_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 39 - 512
Target Start/End: Original strand, 39982212 - 39982685
Alignment:
| Q |
39 |
tccagattaaaataactatttcaatattatagaattgtgaccttactcatttgaccatattttaacagataggcaatctcgagactctcttattacatgg |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982212 |
tccagattaaaataactatttcaatattatagaattgtgaccttactcatttgaccatattttaacagataggcaatctcgagactctcttattacatgg |
39982311 |
T |
|
| Q |
139 |
accagaagagactacaaggggagaaagtaagtacctgagccaaatgctaagccaaaagcttaggcctacatttgagggaaatcctattaagaggtggtat |
238 |
Q |
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| T |
39982312 |
accagaagagactacaaggggagaaagtaagtacctgagccaaatgctaagccaaaagcttaggcctacatttgagggaaatcctattaagaggtggtat |
39982411 |
T |
|
| Q |
239 |
agagataccaagtacttcttccaggataactggcgaagatcctgggtatttgctctgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgc |
338 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39982412 |
agagataccaagtacttcttccaggataactggcgaagatcctgggtatttgctctgtggattggtgtcatgttaggcctatttgcctttaaatttgtgc |
39982511 |
T |
|
| Q |
339 |
aatataggagaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaaaggggctgctgaaacacttaaattgaacatggccattatcttatt |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982512 |
aatataggagaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaaaggggctgctgaaacacttaaattgaacatggccattatcttatt |
39982611 |
T |
|
| Q |
439 |
gcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctaggcgcttttgttccttttgatgatg |
512 |
Q |
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| T |
39982612 |
gcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctaggcgcttttgttccttttgatgatg |
39982685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39982199 - 39982159
Alignment:
| Q |
1 |
gatactgtcatttaattaccaagatatatcctgtgtcatcc |
41 |
Q |
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| T |
39982199 |
gatactgtcatttaattaccaagatatatcctgtgtcatcc |
39982159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 158 - 511
Target Start/End: Original strand, 44914329 - 44914682
Alignment:
| Q |
158 |
ggagaaagtaagtacctgagccaaatgctaagccaaaagcttaggcctacatttgagggaaatcctattaagaggtggtatagagataccaagtacttct |
257 |
Q |
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| T |
44914329 |
ggagatagtaagtacctgagccaaatgctaagcataaagcttaagggtacatatgaatacaatcctgttcggaagaggtatagagatgccatttactttc |
44914428 |
T |
|
| Q |
258 |
tccaggataactggcgaagatcctgggtatttgctctgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgc |
357 |
Q |
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| T |
44914429 |
tgcaggacaattggcaaagaacttggatattggtactatggattggtgttatgtgtggtctatttgcctacaaattcatgcagtacagaagaaaagatgc |
44914528 |
T |
|
| Q |
358 |
atataaagtgatggggcactgtgtgtgcatggcaaaaggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacacc |
457 |
Q |
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||| |||| ||||| || |||||||||||||| ||||| || ||||| ||||| |||||||||||||| |||||||| || |||||||| ||||||||| |
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| T |
44914529 |
ttatgaagtaatgggtcattgtgtgtgcatggctaaaggtgcagctgagacactcaaattgaacatggctattatcttgttacctgtttgtcgaaacacc |
44914628 |
T |
|
| Q |
458 |
atcacttggctcaggaataagaccaagctaggcgcttttgttccttttgatgat |
511 |
Q |
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||||| ||||| ||||| |||||||| |||||| | |||||||||||||||| |
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| T |
44914629 |
atcacatggcttaggaacaagaccaaactaggcattgctgttccttttgatgat |
44914682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 294 - 510
Target Start/End: Original strand, 44898551 - 44898767
Alignment:
| Q |
294 |
tgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaa |
393 |
Q |
| |
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|||||||| |||| |||| || |||||||||| ||||| |||| ||||| |||| | |||||||| |||||||||| || ||||| || ||||| || |
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| T |
44898551 |
tgtggattggtgttatgtgtggtctatttgcctacaaattcatgcagtatagaagaaaagctgcatatgaagtgatgggccattgtgtctgtatggctaa |
44898650 |
T |
|
| Q |
394 |
aggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctaggcgct |
493 |
Q |
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||| || ||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||| | || ||||| ||| | ||||||||||||||| | |
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| T |
44898651 |
aggtgcagctgagacactcaaattgaatatggccattatcttattacctgtttgccgaaacaccgtaacctggcttagggacaagaccaagctaggcatt |
44898750 |
T |
|
| Q |
494 |
tttgttccttttgatga |
510 |
Q |
| |
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| T |
44898751 |
gctgttccttttgatga |
44898767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 294 - 510
Target Start/End: Original strand, 44885223 - 44885439
Alignment:
| Q |
294 |
tgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaa |
393 |
Q |
| |
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|||||||| | || |||||||| |||||||||| ||||||||||| ||| | |||| | |||| ||| | |||||||| || ||||| |||||||| || |
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| T |
44885223 |
tgtggattggagttatgttaggtctatttgcctacaaatttgtgcagtatcgaagaaaagctgcttatgaggtgatgggccattgtgtttgcatggctaa |
44885322 |
T |
|
| Q |
394 |
aggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctaggcgct |
493 |
Q |
| |
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||| || ||||| ||||| |||||||||||||| ||||||| || ||||||||||||||||| | || |||||||||| ||||||||||||||| | |
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| T |
44885323 |
aggtgcagctgagacactcaaattgaacatggctcttatcttgttacctgtttgccgaaacactgttacatggctcaggagcaagaccaagctaggcatt |
44885422 |
T |
|
| Q |
494 |
tttgttccttttgatga |
510 |
Q |
| |
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| T |
44885423 |
gttgttccttttaatga |
44885439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 511
Target Start/End: Complemental strand, 46562263 - 46562141
Alignment:
| Q |
389 |
gcaaaaggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctag |
488 |
Q |
| |
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||||| || |||||||| || || || || |||||||| | || ||| |||||||||| |||||||||||||||||||||| | |||||||| ||| |
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| T |
46562263 |
gcaaagggtgctgctgagactctcaagttcaacatggcattaattttaatgcctgtttgtagaaacaccatcacttggctcagaagcaagaccaaattag |
46562164 |
T |
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| Q |
489 |
gcgcttttgttccttttgatgat |
511 |
Q |
| |
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| | | ||||||| ||||||||| |
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| T |
46562163 |
gagttgttgttccctttgatgat |
46562141 |
T |
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