View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19265_high_7 (Length: 335)
Name: NF19265_high_7
Description: NF19265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19265_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 4082345 - 4082663
Alignment:
| Q |
18 |
catttggagaacacgcttcttgtttggcctgtccagagaggcaaagagagtgaagaaaagaaaggtcacgtgaatgactgcaacagctgatatcacagtg |
117 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4082345 |
catttggagaacacgcttgttgtttggcctgtccagagaggcaaagagagtgaagaaaagaaaggtcacgtgaatgactgcaacaactgatatcacagtg |
4082444 |
T |
|
| Q |
118 |
tgtttaacacttgt---ctcgttcaggtatcgcaaaacatctttgtcaagttgagaacagagtagagcaccaaatgccataacaactctcacacagatag |
214 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4082445 |
tgtttaacacttgtgtgctcgttcaggtatcgcaaaacatctttgtcaagttgagaacagagtagagcaccaaatgccataacaactctcacacagatag |
4082544 |
T |
|
| Q |
215 |
attcaaagatctgaaaacactccctcatctcaacatgagggtcttcaagagtctggacaacagccattgaaatttgaaagtttcttccggctccggcttc |
314 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4082545 |
attcaaagatctgaaaacgctccctcatctcaacatgagggtcttcaagagtctggacaacagccattgaaatttgaaagtttcttccgactccggcttc |
4082644 |
T |
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| Q |
315 |
cgttggtttgtgtttgtgt |
333 |
Q |
| |
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| ||||||||||||||||| |
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| T |
4082645 |
cattggtttgtgtttgtgt |
4082663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 4092054 - 4092372
Alignment:
| Q |
18 |
catttggagaacacgcttcttgtttggcctgtccagagaggcaaagagagtgaagaaaagaaaggtcacgtgaatgactgcaacagctgatatcacagtg |
117 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4092054 |
catttggagaacacgcttgttgtttggcctgtccagagaggcaaagagagtgaagaaaagaaaggtcacgtgaatgactgcaacagctgatatcacagtt |
4092153 |
T |
|
| Q |
118 |
tgtttaacacttgt---ctcgttcaggtatcgcaaaacatctttgtcaagttgagaacagagtagagcaccaaatgccataacaactctcacacagatag |
214 |
Q |
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|||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4092154 |
tgtttaacacttatgtgctagttcaggtatcgcaaaacatctttgtcaagttgagaacagagtagagcaccaaatgccataacaactctcacacagatag |
4092253 |
T |
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| Q |
215 |
attcaaagatctgaaaacactccctcatctcaacatgagggtcttcaagagtctggacaacagccattgaaatttgaaagtttcttccggctccggcttc |
314 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4092254 |
attcaaagatcttaaaacgctccctcatctcaacatgagggtcttcaagagtctggacaacatccattgaaatttgaaagtttcttccggctccggcttc |
4092353 |
T |
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| Q |
315 |
cgttggtttgtgtttgtgt |
333 |
Q |
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| ||||||||||||||||| |
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| T |
4092354 |
cattggtttgtgtttgtgt |
4092372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 4086494 - 4086605
Alignment:
| Q |
18 |
catttggagaacacgcttcttgtttggcctgtccagagaggcaaagagagtgaagaaaagaaaggtcacgtgaatgactgcaacagctgatatcacagtg |
117 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4086494 |
catttggagaacacgcttgttgtttggcctgtccagagaggcaaagagagtgaagaaaagaaaggtcacgtgaatgactgcaacaactgatatcacagtg |
4086593 |
T |
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| Q |
118 |
tgtttaacactt |
129 |
Q |
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|||||||||||| |
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| T |
4086594 |
tgtttaacactt |
4086605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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