View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19265_high_8 (Length: 277)
Name: NF19265_high_8
Description: NF19265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19265_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 36970748 - 36970490
Alignment:
| Q |
1 |
ccaagtaccaaacatagtagtcatcggtaagaaaatataagcagttaaaagggttttaaaagtcaaatgnnnnnnn-gcttctatttcgttacggattgg |
99 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36970748 |
ccaagtaccaaacatagtagtcatcggtaagaaaatacaagcagttaaaagggttttaaaagtcaaatgttttttttgcttctatttcgttacggattgg |
36970649 |
T |
|
| Q |
100 |
actacaaaagagaactcataaaatccacgcttttctagcgtatctttaagtagggtttgctccttcaaatcaatcttggagttcatttgtagttcctttc |
199 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
36970648 |
actacaaaagagaactcataaaatccatgcttttctagagtatctttaagtagggtttgctccttcaaatcaatcttggagttaatatgtagttcctttc |
36970549 |
T |
|
| Q |
200 |
cttttctgaagatggaatcaatgaagaagaacatttctaattttgttggatgtatgtga |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36970548 |
cttttctgaagatggaatcaatgaagaagaacatttctaattttgttggatgtatgtga |
36970490 |
T |
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