View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19265_low_1 (Length: 609)

Name: NF19265_low_1
Description: NF19265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19265_low_1
NF19265_low_1
[»] chr5 (13 HSPs)
chr5 (18-597)||(13447062-13447643)
chr5 (275-597)||(13419511-13419833)
chr5 (330-597)||(13426402-13426669)
chr5 (318-595)||(13413168-13413445)
chr5 (349-595)||(13388988-13389234)
chr5 (349-470)||(13385167-13385288)
chr5 (349-469)||(13454143-13454263)
chr5 (18-125)||(13426921-13427028)
chr5 (20-63)||(13414023-13414066)
chr5 (523-597)||(13454015-13454089)
chr5 (18-138)||(13419971-13420091)
chr5 (516-595)||(13393562-13393641)
chr5 (357-431)||(13393403-13393477)
[»] chr4 (2 HSPs)
chr4 (503-577)||(47601353-47601427)
chr4 (360-400)||(47601530-47601570)
[»] chr8 (1 HSPs)
chr8 (18-93)||(28429319-28429394)


Alignment Details
Target: chr5 (Bit Score: 516; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 18 - 597
Target Start/End: Complemental strand, 13447643 - 13447062
Alignment:
Q  18 agaaagatgtagcattcaaggtgttatattgtgggatatgtcactcagaccttcacattatgcagaatgaatggggcaaaaccacctatccattggtccc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13447643 agaaagatgtagcattcaaggtgttatattgtgggatatgtcactctgaccttcacattatgcagaatgaatggggcaaaaccacctatccattagtccc 13447544  T
Q  118 ggggtatgttttcaacacctttaatttctattatagtttattctattgtttctttttaattgtcatattttaagtaaaaacaaatatttt--gagttata 215  Q
    |||||||||||||||||||||||| ||||||||||||||||||  |  ||||||||||||||||| ||||||||||||| ||||||||||  ||||||||    
T  13447543 ggggtatgttttcaacacctttaacttctattatagtttattccgtcatttctttttaattgtcacattttaagtaaaa-caaatattttttgagttata 13447445  T
Q  216 cctttactttatcaa-ttattttatacttactatgataactagtagactgagtcaatcaaaagaaacgagtagaaaataattgctcaatttggttataac 314  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13447444 cctttactttatcaaattattttatacttactatgataactagtagactgagtcaatcaaaagaaacgagtagaaaataattgctcaatttcgttataac 13447345  T
Q  315 taatgtaataaatataggcacgaacttacgggtgtagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggataca 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447344 taatgtaataaatataggcacgaacttacgggtgtagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggataca 13447245  T
Q  415 tggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcac 514  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447244 tggttgattcatgtcgttcttgcgaaaattgtgccgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcac 13447145  T
Q  515 tatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatg 597  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447144 tatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatg 13447062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 275 - 597
Target Start/End: Complemental strand, 13419833 - 13419511
Alignment:
Q  275 aagaaacgagtagaaaataattgctcaatttggttataactaatgtaataaatataggcacgaacttacgggtgtagtaacagaggtgggaagcaaagta 374  Q
    |||||| |||||| ||||||||| |||||||| |||||| | || ||||||||  ||||| |||||| ||||| ||||||| ||||| ||||||||||||    
T  13419833 aagaaatgagtagtaaataattgttcaatttgtttataatttatttaataaatgcaggcatgaacttgcgggtatagtaaccgaggttggaagcaaagta 13419734  T
Q  375 aaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcacca 474  Q
     ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||  |||||||||| |||||| |||||||||||||| | |    
T  13419733 gaaaagtttaaagttggagacaaagttggtgtgggatacatggttgattcatgtcgttcatgccaaaattgtgctgacgatcttgagaattactgcccaa 13419634  T
Q  475 aatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcat 574  Q
     || |||    ||||    ||  |||| ||||||||||||  |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13419633 catttacagtcacatgtggtgcaaagtatcgtgatggcaccgtcacatatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcat 13419534  T
Q  575 tcctgatagcttacctcttgatg 597  Q
    |||||||||||||||||||||||    
T  13419533 tcctgatagcttacctcttgatg 13419511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 330 - 597
Target Start/End: Complemental strand, 13426669 - 13426402
Alignment:
Q  330 aggcacgaacttacgggtgtagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtc 429  Q
    ||||| |||||| ||||| | ||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13426669 aggcatgaacttgcgggtattgtaacagaggttggaagcaaagtagaaaagtttaaagttggagacaaagtaggagtgggatacatggttgattcatgtc 13426570  T
Q  430 gttcttgtgaaaattgtgccgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggagg 529  Q
    |||| || ||||||||||| || ||| |||||||||||||| || || | ||    ||||    || ||||| |||||||||||   |||| ||||||||    
T  13426569 gttcatgcgaaaattgtgcggaagatcttgagaattactgcccccaacaaacagttacatgtggtgctaagtatcgtgatggcagcgtcacatatggagg 13426470  T
Q  530 tttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatg 597  Q
    ||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13426469 ttattccgactcaatggttgcagatgagcactttgtgattcgcattcctgatagcttacctcttgatg 13426402  T

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Target: chr5; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 318 - 595
Target Start/End: Complemental strand, 13413445 - 13413168
Alignment:
Q  318 tgtaataaatataggcacgaacttacgggtgtagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatgg 417  Q
    ||||||||||| ||||| || ||| ||||| |||||||||| || |||||||||||  | |||||||||||||||||||||||||| || || ||| ||     
T  13413445 tgtaataaatacaggcatgagcttgcgggtatagtaacagaagtaggaagcaaagtggagaagtttaaagttggagacaaagtaggtgttggctacttga 13413346  T
Q  418 ttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactat 517  Q
    ||||||||||||| || ||  || |||||   ||| || |||||||||||||| |||||| |      ||||    ||  |||| ||||||||| ||  |    
T  13413345 ttgattcatgtcgatcatgccaagattgtaatgacaatcttgagaattactgccccaaatttgtagtcacatgtggtgccaagtatcgtgatggaaccgt 13413246  T
Q  518 cacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttga 595  Q
    ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||    
T  13413245 cacttatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcattcctgacaacatacctcttga 13413168  T

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Target: chr5; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 349 - 595
Target Start/End: Original strand, 13388988 - 13389234
Alignment:
Q  349 tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgc 448  Q
    |||| ||| ||||||||||||||||| ||||||| || ||||||||||||||||| || || |||||||||||||||||||| || ||| |||||||||     
T  13388988 tagtgacaaaggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacatggttgattcatgtcgatcatgtcaaaattgtgt 13389087  T
Q  449 cgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggtt 548  Q
     ||| || |||| ||||||||  ||| || ||||   ||||    ||  |||| ||| ||||| || | ||| ||||||||||  || |||||| |||||    
T  13389088 tgacaatcttgaaaattactgtcccacatttactttcacatgtggtgccaagtatcgcgatggaacgagcacatatggaggttattctgactcattggtt 13389187  T
Q  549 gcagacgagcactttgtgattcgcattcctgatagcttacctcttga 595  Q
    ||||| ||| |||| ||| ||| |||||||||| | ||||| |||||    
T  13389188 gcagatgagaacttcgtggttcacattcctgatggattaccacttga 13389234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 349 - 470
Target Start/End: Original strand, 13385167 - 13385288
Alignment:
Q  349 tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgc 448  Q
    |||| ||| ||||||||||||||||| ||||||| || ||||||||||||||||| || || |||||  ||||||||||||| || ||| |||||||||     
T  13385167 tagtgacaaaggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacataattgattcatgtcgatcgtgtcaaaattgtgt 13385266  T
Q  449 cgacgatattgagaattactgc 470  Q
     ||| || |||| |||||||||    
T  13385267 tgacaatcttgaaaattactgc 13385288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 349 - 469
Target Start/End: Complemental strand, 13454263 - 13454143
Alignment:
Q  349 tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgc 448  Q
    |||| ||||| |||||||||||||| |||||||| ||||||||||||| |||||| ||||||| | |||||||||| ||||  || ||| |||||||||     
T  13454263 tagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgt 13454164  T
Q  449 cgacgatattgagaattactg 469  Q
     ||  || |||||||||||||    
T  13454163 tgataatcttgagaattactg 13454143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 13427028 - 13426921
Alignment:
Q  18 agaaagatgtagcattcaaggtgttatattgtgggatatgtcactcagaccttcacattatgcagaatgaatggggcaaaaccacctatccattggtccc 117  Q
    ||||||||||||||||||||||||| |||||||| ||||||||| | || || || || ||| ||||||||||||||||  ||| ||||||||| || ||    
T  13427028 agaaagatgtagcattcaaggtgttgtattgtggtatatgtcacactgatctccatatgatgaagaatgaatggggcaattccatctatccattagttcc 13426929  T
Q  118 ggggtatg 125  Q
     |||||||    
T  13426928 agggtatg 13426921  T

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Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 13414066 - 13414023
Alignment:
Q  20 aaagatgtagcattcaaggtgttatattgtgggatatgtcactc 63  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  13414066 aaagatgtagcattcaaggtgttgtattgtgggatatgtcactc 13414023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 523 - 597
Target Start/End: Complemental strand, 13454089 - 13454015
Alignment:
Q  523 atggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatg 597  Q
    ||||||| ||||| |||||||||||| | ||||||||||||||| |||||||||| |||   |||||||||||||    
T  13454089 atggaggcttctctgactcaatggtttccgacgagcactttgtgtttcgcattccagatcagttacctcttgatg 13454015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 13420091 - 13419971
Alignment:
Q  18 agaaagatgtagcattcaaggtgttatattgtgggatatgtcactcagaccttcacattatgcagaatgaatggggcaaaaccacctatccattggtccc 117  Q
    ||||||||||||| ||||||||| | |||||||| ||||| ||| | ||||| || || ||| ||||||||||||| ||  ||| ||||||||| || ||    
T  13420091 agaaagatgtagcgttcaaggtgatgtattgtggtatatgccacactgacctccatatgatgaagaatgaatggggaaattccatctatccattagttcc 13419992  T
Q  118 ggggtatgttttcaacacctt 138  Q
     ||||||| || |||| ||||    
T  13419991 agggtatgcttccaactcctt 13419971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 516 - 595
Target Start/End: Original strand, 13393562 - 13393641
Alignment:
Q  516 atcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttga 595  Q
    ||||| |||||||| | ||| ||||||||||||||||| ||||||||| |  ||| |||||||||| ||||||| |||||    
T  13393562 atcacatatggagggtactctgactcaatggttgcagatgagcactttatagttcacattcctgatggcttaccacttga 13393641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 431
Target Start/End: Original strand, 13393403 - 13393477
Alignment:
Q  357 gaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgt 431  Q
    ||||| |||||||||||| | ||||| ||| ||||||||||||| || ||||||| | | |||||||| ||||||    
T  13393403 gaggtaggaagcaaagtagagaagttcaaaattggagacaaagtgggtgtgggatgcttagttgattcgtgtcgt 13393477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 503 - 577
Target Start/End: Complemental strand, 47601427 - 47601353
Alignment:
Q  503 tcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcc 577  Q
    |||||||||||| | ||| || ||||||| ||| ||||||||||||| |||||||||||||||| ||| ||||||    
T  47601427 tcgtgatggcaccaccacatacggaggttactctgactcaatggttgtagacgagcactttgtggttcacattcc 47601353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 47601570 - 47601530
Alignment:
Q  360 gtgggaagcaaagtaaaaaagtttaaagttggagacaaagt 400  Q
    ||||||||||||||| ||||||| |||||||||||||||||    
T  47601570 gtgggaagcaaagtagaaaagttcaaagttggagacaaagt 47601530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 28429319 - 28429394
Alignment:
Q  18 agaaagatgtagcattcaaggtgttatattgtgggatatgtcactcagaccttcacattatgcagaatgaatgggg 93  Q
    |||||||||||  |||||| ||| ||| |||||| |||||||||||||| ||||||||  || |||||||||||||    
T  28429319 agaaagatgtaagattcaaagtgctattttgtggtatatgtcactcagatcttcacatgttgaagaatgaatgggg 28429394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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