View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19265_low_2 (Length: 605)
Name: NF19265_low_2
Description: NF19265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19265_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 554; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 19 - 600
Target Start/End: Original strand, 43489586 - 43490167
Alignment:
| Q |
19 |
agtatcgtgtttggtatccatgtttttgcctctgattcattgaaaattaatcatcaagaaggagaagagctatgatccgaagtagaccaaggtggcaact |
118 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43489586 |
agtatcgtgtttggtatccatgtttttgcctgtgattcattgaaaattaatcatcaagaaggagaagagctctgatccgaagtagaccaaggtggcaact |
43489685 |
T |
|
| Q |
119 |
gagtagaaaaatacgaggaaactgaagtattgccctgcatagaagaaacaaatgcagaagaagatgatgacaaagaagaagctggcgacgatgatgaaga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43489686 |
gagtagaaaaatacgaggaaactgaagtattgccctgcatagaagaaacaaatgcagaagaagatgatgacaaagaagaagctggcgacgatgatgaaga |
43489785 |
T |
|
| Q |
219 |
ttgtagatgagaagccacagaagaagccctaatcacattatcatcataaatattccttggagcaggaatacccgaaaactgaaaacgatcataaaagttt |
318 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
43489786 |
ttgtagatgagaagccatagaagaagccctaatcacattatcatcataaacattccttgcaggaggaatacccgaaaactgaaaacgatcataaaagttt |
43489885 |
T |
|
| Q |
319 |
gtcgaatgctgagaagagttaggaaaaggtctagtatgaacaacaggatcagtagaagttgtaatagaaacaatcgaactcggtgaattcgaaacgttcc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43489886 |
gtcgaatgctgagaagagttaggaaaaggtctagtatgaacaacaggatcagtagaagttgtaatagaaacaatcgaactcggtgaattcgaaacgttcc |
43489985 |
T |
|
| Q |
419 |
attgagtagtagtagtagctggtggagggttacgaagtgtaacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatc |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43489986 |
attgagtagtagtagtagctggtggagggttacgaagtgtaacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatc |
43490085 |
T |
|
| Q |
519 |
atatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactcttgctgctttgaatggatctcttatctctgct |
600 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43490086 |
atatgctctagcagctgcttcagctgtttcaaatgttcctaaccatactcttgctgctttgaatggatctcttatctctgct |
43490167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 508 - 572
Target Start/End: Original strand, 45013921 - 45013985
Alignment:
| Q |
508 |
gcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactcttgc |
572 |
Q |
| |
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||||||||||||||||| || ||||| ||||| |||||||||||||||| |||||| ||||| |
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| T |
45013921 |
gcagcttcatcatatgcaacggctgcagcctcagccgtttcaaatgttcctagccatacccttgc |
45013985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 458 - 600
Target Start/End: Original strand, 38653101 - 38653243
Alignment:
| Q |
458 |
taacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcc |
557 |
Q |
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|||||||||||||||| |||||||| |||||||| ||||||||||| | | ||||| |||||| ||| |||| ||| ||||||||||||||||||| || |
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| T |
38653101 |
taacattttcagggaagttgagttttgctttgtttcctctaaaacgcaatgaagcttgatcataggctttagctgcatcttcagctgtttcaaatgtacc |
38653200 |
T |
|
| Q |
558 |
taaccatactcttgctgctttgaatggatctcttatctctgct |
600 |
Q |
| |
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|||||||||||||| |||||||| |||||||||||||||||| |
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| T |
38653201 |
taaccatactcttgtagctttgaaaggatctcttatctctgct |
38653243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 458 - 600
Target Start/End: Complemental strand, 13410055 - 13409913
Alignment:
| Q |
458 |
taacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcc |
557 |
Q |
| |
|
|||||||||||||||| |||||||| ||| || | ||||| || | | |||||||||||||| || ||||| |||||||| ||||| || |||||||| |
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| T |
13410055 |
taacattttcagggaagttgagttttgctctgcttcctctgaatctcaatgcagcttcatcataagccctagctgcagcttctgctgtgtcgaatgttcc |
13409956 |
T |
|
| Q |
558 |
taaccatactcttgctgctttgaatggatctcttatctctgct |
600 |
Q |
| |
|
|| |||||||||| ||||||| |||||||||||| |||||| |
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| T |
13409955 |
tagccatactctttgtgctttgtgtggatctcttatttctgct |
13409913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 507 - 570
Target Start/End: Complemental strand, 4038815 - 4038752
Alignment:
| Q |
507 |
agcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactctt |
570 |
Q |
| |
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|||||| |||||||| ||||||||||| |||||||||| ||||| ||||||||||| |||||| |
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| T |
4038815 |
agcagcctcatcataagctctagcagcttcttcagctgtatcaaaagttcctaaccaaactctt |
4038752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 578
Target Start/End: Complemental strand, 10554722 - 10554652
Alignment:
| Q |
508 |
gcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactcttgctgcttt |
578 |
Q |
| |
|
|||||||||||||| || |||| |||||||||||||||||||| || || | ||| ||||||||| |||| |
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| T |
10554722 |
gcagcttcatcataagcagtagctgcagcttcagctgtttcaaaggtgccaagccacactcttgctccttt |
10554652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 459 - 589
Target Start/End: Original strand, 44331736 - 44331866
Alignment:
| Q |
459 |
aacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcct |
558 |
Q |
| |
|
||||||||||||||| |||||||| ||| |||| ||||| || | | ||||||||||| || ||||| || |||||||| || |||||||||||||| |
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| T |
44331736 |
aacattttcagggaagttgagtttcgctctgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttcca |
44331835 |
T |
|
| Q |
559 |
aaccatactcttgctgctttgaatggatctc |
589 |
Q |
| |
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| ||||||||||||||||||| |||||||| |
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| T |
44331836 |
agccatactcttgctgctttgtgtggatctc |
44331866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 511 - 571
Target Start/End: Complemental strand, 1726310 - 1726250
Alignment:
| Q |
511 |
gcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactcttg |
571 |
Q |
| |
|
||||||||||||||||| || ||| |||| ||||||||||||||||||||||||| ||||| |
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|
| T |
1726310 |
gcttcatcatatgctcttgctgcatcttctgctgtttcaaatgttcctaaccatattcttg |
1726250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 511 - 563
Target Start/End: Original strand, 2428679 - 2428731
Alignment:
| Q |
511 |
gcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaacca |
563 |
Q |
| |
|
|||||||||||||||||||| || |||||||||| ||||||||||||||||| |
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|
| T |
2428679 |
gcttcatcatatgctctagctgcttcttcagctgtctcaaatgttcctaacca |
2428731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 511 - 563
Target Start/End: Original strand, 44648686 - 44648738
Alignment:
| Q |
511 |
gcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaacca |
563 |
Q |
| |
|
||||||||||||||| |||| || |||||||||||||||||||||||||||| |
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|
| T |
44648686 |
gcttcatcatatgctttagctgcttcttcagctgtttcaaatgttcctaacca |
44648738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 570
Target Start/End: Complemental strand, 3160346 - 3160284
Alignment:
| Q |
508 |
gcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactctt |
570 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||||||| ||||| ||||||||||| |||||| |
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|
| T |
3160346 |
gcagcttcatcataggctcttgcagcttcttcagctgtatcaaaagttcctaaccaaactctt |
3160284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 536 - 578
Target Start/End: Complemental strand, 6568990 - 6568948
Alignment:
| Q |
536 |
cttcagctgtttcaaatgttcctaaccatactcttgctgcttt |
578 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| |||||||| |
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|
| T |
6568990 |
cttcagctgtatcaaatgttcctaaccaaactctagctgcttt |
6568948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 536 - 578
Target Start/End: Complemental strand, 6583149 - 6583107
Alignment:
| Q |
536 |
cttcagctgtttcaaatgttcctaaccatactcttgctgcttt |
578 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| |||||||| |
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| T |
6583149 |
cttcagctgtgtcaaatgttcctaaccaaactctagctgcttt |
6583107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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