View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19265_low_3 (Length: 521)
Name: NF19265_low_3
Description: NF19265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19265_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 17 - 512
Target Start/End: Original strand, 31391058 - 31391552
Alignment:
| Q |
17 |
catcaaccctttgaatcaagcagcagtactatatacttttgaattgaaggataaagagacttttacttgctcaatttagagagaaacttatcatagacaa |
116 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
31391058 |
catcgaccctttgaatcaagcagcagtactatatacttttgaattgaaggataaagagatttttacatgctcaatttagagagaaacttatcatagacaa |
31391157 |
T |
|
| Q |
117 |
gtattacccaacctttatcatatgacaaaattatccaattcatatttcaggaaaatggcagcatgtcaaagaaacttatgaaattggtgaagggaaacta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31391158 |
gtattacccaacctttatcatatgacaaaattatccaattcatatttcaggaaaatggcagcatgtcaaagaaactcatgaaattggtgaagggaaacta |
31391257 |
T |
|
| Q |
217 |
ttctccccaggaaatttgagagccacatttgacaacaaagattatgctaaggtctacatttatcttatatgagaaaaatatattgttgtttgtattatta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31391258 |
ttctccccaggaaatttgagagccacatttgacaacaaagattatgctaaggtctacatttatcttatatgagaaaaatacattgttgtttgtattatta |
31391357 |
T |
|
| Q |
317 |
acattatcaatggatactaacttcttcgtttttcatcgattagttggtcgattactatgttagagaaaaatacacattgagatacactggaggaatggtg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31391358 |
acattatcaatggatactaacttcttcgtttttcatcgattagttggtcgattactatgttagagaaaaatacacattgagatacactggaggaatggtg |
31391457 |
T |
|
| Q |
417 |
ccagatgttaaccaggttcttttctcaacacattcatatatgacattataagtttataacaagtccttgatacaaaattacttcactaagaattat |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31391458 |
ccagatgttaaccaggttcttttctcaacacattcatatatgacattataa-tttataacaagtccttgatacaaaattacttcactaagacttat |
31391552 |
T |
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