View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19265_low_4 (Length: 424)
Name: NF19265_low_4
Description: NF19265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19265_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 20 - 414
Target Start/End: Original strand, 34547611 - 34548006
Alignment:
| Q |
20 |
aactagatattagccatacaattcaaggatacaaacttgtaaagatgcataaacacacaacaacggccaaactatggcaaattatttcagaactt-aata |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34547611 |
aactagatattagccatacaattcaaggatacaaacttgtaaagatacataaacacacaacaacggccaaactatggcaaattatttcagaactttaata |
34547710 |
T |
|
| Q |
119 |
aaattcacaccaacaatttaatgagcacgcatgattagaacatcatcattatgattatccattagcttccaagtaccatcagattgttgaaccataccct |
218 |
Q |
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| T |
34547711 |
aaattcacaccaacaatttaatgagcacgcatgattagaacatcatcattatgatcatccattaacttccaagtaccatcagattgttgaaccataccct |
34547810 |
T |
|
| Q |
219 |
tattctccactaccctccaattctcaggaatatgatactcatcttttaaaccatcattacttttgtttaatagtgcaatgtcacgattcacctctaaatt |
318 |
Q |
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||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34547811 |
tattctcaactaccctccaattctcaggaatgtgatattcatcttttaaaccatcattacttttgtttaatagtgcaatgtcacgattcacctctaaatt |
34547910 |
T |
|
| Q |
319 |
gaaccctcctttacttccttgtgttcctgcaattccatgcaagtaaacctccatgttatgtgcactaaccccactcttcaagtacttagattcttc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34547911 |
gaaccctcctttacttccttgtgttcctgcaattccatgcaagtaaacctccatgttatgtgcactaaccccactcttcaagtacttagattcttc |
34548006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 142 - 410
Target Start/End: Original strand, 34556227 - 34556495
Alignment:
| Q |
142 |
agcacgcatgattagaacatcatcattatgattatccattagcttccaagtaccatcagattgttgaaccatacccttattctccactaccctccaattc |
241 |
Q |
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| T |
34556227 |
agcacgcatgattagaacatcatcattatgatcatccattagcttccaagtaccatcagattgttgaaccatacccttattctccactaccctccaattc |
34556326 |
T |
|
| Q |
242 |
tcaggaatatgatactcatcttttaaaccatcattacttttgtttaatagtgcaatgtcacgattcacctctaaattgaaccctcctttacttccttgtg |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
34556327 |
tcaggaatatgatactcatcttttaaaccatcattacttttgtttaatagtgcaatgtcacgattcacctccaaattgaaccctcctttgcttccttgtg |
34556426 |
T |
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| Q |
342 |
ttcctgcaattccatgcaagtaaacctccatgttatgtgcactaaccccactcttcaagtacttagatt |
410 |
Q |
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| T |
34556427 |
ttcctgcaattccatgcaagtaaacctccatgttatgttcactaacaccactcttcaagtactttgatt |
34556495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 371
Target Start/End: Original strand, 4674379 - 4674568
Alignment:
| Q |
182 |
agcttccaagtaccatcagattgttgaaccatacccttattctccactaccctccaattctcaggaatatgatactcatcttttaaaccatcattacttt |
281 |
Q |
| |
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|||||||| | |||||| ||||||||||||||||||||||||| || |||||||| | | || | | | || ||||||||||||||||| ||| |
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| T |
4674379 |
agcttccatgaaccatctaattgttgaaccatacccttattctctacaaccctccatgacactggcacaaggtattcatcttttaaaccatccaatgttt |
4674478 |
T |
|
| Q |
282 |
tgtttaatagtgcaatgtcacgattcacctctaaattgaaccctcctttacttccttgtgttcctgcaattccatgcaagtaaacctcca |
371 |
Q |
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| || | |||||||| |||||||| ||||| | |||||| ||| |||||| |||||||||||||| | ||||||||| ||| |||||| |
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| T |
4674479 |
tattcacaagtgcaatatcacgattaacctcaagtttgaacactcttttactcccttgtgttcctgccactccatgcaaataagcctcca |
4674568 |
T |
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