View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_high_10 (Length: 527)
Name: NF19266_high_10
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 28 - 517
Target Start/End: Complemental strand, 6996085 - 6995598
Alignment:
| Q |
28 |
ggacttgaggttggggcattgatgctggatggggggcctaagccacaaacgatagctggtaagcccttaggccccttagccccaactcggggctactgtt |
127 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
6996085 |
ggacttgaggttggggcattgatgctggatgggg--cctaagccacaaacgatagctggtaagcccttaggccccttagccccgacttggggctactgtt |
6995988 |
T |
|
| Q |
128 |
ccagtacaccaagaagtctcacatttctttgaaattaaaattaagagtaatttatacaaaccacgcactcaactaaccaaggcgtctttcaactaatggc |
227 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
6995987 |
ccagtacaccaagaagtctcacattgcttcgaaattaaaattaagagtaatttatacaaaccacgcactcaactaaccaaggcatctttcaactaatggc |
6995888 |
T |
|
| Q |
228 |
gaaaccacaagggcttacaccaggcccataaaaacggtgcaatagacttgagttccggccaccttctaaagcaaaatgctcactttagatgagcttaatc |
327 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6995887 |
gaaaccgcaagggcttacaccgggcccataaaaacggtgcaatagacttgagttccagccaccttctaaagcaaaatgctcactttagatgagcttaatc |
6995788 |
T |
|
| Q |
328 |
caagaaaaacactacatagatatggtgacaacactagtctnnnnnnnnnnnnctctacattaaaatagaaaatattcacctgtaaatcaaagaccggtat |
427 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6995787 |
caagaaaaacactacatagatatggtgacaacacgagtctaaaaagaaaaaactctacattaaaatagaaaatattcacctgtaaatcaaagaccggtat |
6995688 |
T |
|
| Q |
428 |
ccttttttgcttagatttacatgaaactcaaagctaccaaggatctcattctcaaaatcattagagtaacaacgttcccatttccctatg |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6995687 |
ccttttttgcttagatttacatgaaactcaaagctaccaaggatctcattctcaaaatcattagagtaacaacgttcccatttccctatg |
6995598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 258 - 517
Target Start/End: Complemental strand, 7005478 - 7005220
Alignment:
| Q |
258 |
aaaacggtgcaatagacttgagttccggccaccttctaaagcaaaatgctcactttagatgagcttaatccaagaaaaacactacatagatatggtgaca |
357 |
Q |
| |
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|||| ||||||||||||||||||| | ||||||||||||||||||| ||||||||||| || |||||||||||||||| | |||||||||||||||||| |
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| T |
7005478 |
aaaatggtgcaatagacttgagtttcaaccaccttctaaagcaaaattctcactttagacgaacttaatccaagaaaaaga-tacatagatatggtgaca |
7005380 |
T |
|
| Q |
358 |
acactagtctnnnnnnnnnnnnctctacattaaaatagaaaatattcacctgtaaatcaaagaccggtatccttttttgcttagatttacatgaaactca |
457 |
Q |
| |
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|||| ||||| | ||||||||||| ||||||| |||||||||| |||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
7005379 |
acacgagtctaaaaagaaaaaacgctacattaaaagagaaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactca |
7005280 |
T |
|
| Q |
458 |
aagctaccaaggatctcattctcaaaatcattagagtaacaacgttcccatttccctatg |
517 |
Q |
| |
|
|||||||||| || |||| |||||||||||| ||||||||||||||||||||||||| |
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|
| T |
7005279 |
aagctaccaaatatatcatactcaaaatcattcatgtaacaacgttcccatttccctatg |
7005220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 261 - 517
Target Start/End: Complemental strand, 7015268 - 7015012
Alignment:
| Q |
261 |
acggtgcaatagacttgagttccggccaccttctaaagcaaaatgctcactttagatgagcttaatccaagaaaaacactacatagatatggtgacaaca |
360 |
Q |
| |
|
|||||||||| ||| |||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| | |||||||||||||| |
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|
| T |
7015268 |
acggtgcaatggacatgagtttcgaccaccttctaaagcaaaatgctcacttttgatgagcttaatccaagaaaaagactacaaacatatggtgacaaca |
7015169 |
T |
|
| Q |
361 |
ctagtctnnnnnnnnnnnnctctacattaaaatagaaaatattcacctgtaaatcaaagaccggtatccttttttgcttagatttacatgaaactcaaag |
460 |
Q |
| |
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| || || | ||||||||||| ||||||| |||||||||| |||||||| |||||||||||||||||||||||| |||||||||||| | |
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| T |
7015168 |
cgagcctaaaaagaaaaaacgctacattaaaagagaaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaacg |
7015069 |
T |
|
| Q |
461 |
ctaccaaggatctcattctcaaaatcattagagtaacaacgttcccatttccctatg |
517 |
Q |
| |
|
||||||| || |||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7015068 |
ctaccaaatatatcatactcaaaatcattcatgtaacaacgttcccatttccctatg |
7015012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 380 - 519
Target Start/End: Complemental strand, 7041221 - 7041081
Alignment:
| Q |
380 |
ctctacatta-aaatagaaaatattcacctgtaaatcaaagaccggtatccttttttgcttagatttacatgaaactcaaagctaccaaggatctcattc |
478 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| |||||||| || ||||||||||||||||||||| |||||||||||| ||||| || ||||||| | |
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|
| T |
7041221 |
ctctacattataaagagaaaatattcacctgtatatcaaagagcgatatccttttttgcttagatttgcatgaaactcaacgctactaaagatctcacgc |
7041122 |
T |
|
| Q |
479 |
tcaaaatcattagagtaacaacgttcccatttccctatgct |
519 |
Q |
| |
|
||||||||| ||| |||||| |||||||||||||||||||| |
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|
| T |
7041121 |
tcaaaatcagtagtgtaacatcgttcccatttccctatgct |
7041081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 396 - 519
Target Start/End: Complemental strand, 7028756 - 7028633
Alignment:
| Q |
396 |
aaaatattcacctgtaaatcaaagaccggtatccttttttgcttagatttacatgaaactcaaagctaccaaggatctcattctcaaaatcattagagta |
495 |
Q |
| |
|
||||| |||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| ||||| || ||||||| |||||||||| ||| ||| |
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| T |
7028756 |
aaaatcttcacctgtatatcaaagagcggtatccttttttgcttagattcacatgaaactcaacgctactaaagatctcacgctcaaaatcagtagtgta |
7028657 |
T |
|
| Q |
496 |
acaacgttcccatttccctatgct |
519 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
7028656 |
acatcgttcccatttccctatgct |
7028633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 382 - 517
Target Start/End: Complemental strand, 7057177 - 7057041
Alignment:
| Q |
382 |
ctacatta-aaatagaaaatattcacctgtaaatcaaagaccggtatccttttttgcttagatttacatgaaactcaaagctaccaaggatctcattctc |
480 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||| |||||||| |||||||||||||||||||||||| |||||||||||| ||||| || |||||| ||| |
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|
| T |
7057177 |
ctacattagaaagagaaaatcttcacctgtatatcaaagagcggtatccttttttgcttagatttgcatgaaactcaacgctactaaaaatctcacgctc |
7057078 |
T |
|
| Q |
481 |
aaaatcattagagtaacaacgttcccatttccctatg |
517 |
Q |
| |
|
||||||| || |||||| ||||||||||| |||||| |
|
|
| T |
7057077 |
aaaatcagtacggtaacatcgttcccattttcctatg |
7057041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 380 - 517
Target Start/End: Complemental strand, 7048340 - 7048202
Alignment:
| Q |
380 |
ctctacatta-aaatagaaaatattcacctgtaaatcaaagaccggtatccttttttgcttagatttacatgaaactcaaagctaccaaggatctcattc |
478 |
Q |
| |
|
|||||||||| ||| ||||||| |||||||||| |||||||| |||||||||||||||||||||||| |||||||||||| | ||| || ||||||| | |
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|
| T |
7048340 |
ctctacattagaaagagaaaatcttcacctgtatatcaaagagcggtatccttttttgcttagatttgcatgaaactcaacggtactaaagatctcacgc |
7048241 |
T |
|
| Q |
479 |
tcaaaatcattagagtaacaacgttcccatttccctatg |
517 |
Q |
| |
|
| ||||||| ||| |||||| ||||||||| | |||||| |
|
|
| T |
7048240 |
ttaaaatcagtagtgtaacatcgttcccatgttcctatg |
7048202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 402 - 515
Target Start/End: Complemental strand, 7022013 - 7021900
Alignment:
| Q |
402 |
ttcacctgtaaatcaaagaccggtatccttttttgcttagatttacatgaaactcaaagctaccaaggatctcattctcaaaatcattagagtaacaacg |
501 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||| |||||||||||| ||| | || |||||| |||||||||||| || ||||||||| |
|
|
| T |
7022013 |
ttcacctgtatatcaaagagcggtatccttttttgcttagatttgcatgaaactcaacgctgctaaagatctccttctcaaaatcagtattgtaacaacg |
7021914 |
T |
|
| Q |
502 |
ttcccatttcccta |
515 |
Q |
| |
|
| |||||| |||| |
|
|
| T |
7021913 |
ataccattttccta |
7021900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 255
Target Start/End: Complemental strand, 7015376 - 7015290
Alignment:
| Q |
165 |
aaattaagagtaatttatacaaaccacgcactcaactaaccaaggcgtctttcaactaatggcgaaaccacaagggcttacaccaggccca |
255 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| || ||| || ||||||||||| || |||| |
|
|
| T |
7015376 |
aaattaagagtaatttatacaaaccac----tcaactaacaaaggcgtctttcaactaagggtgaagccgtgagggcttacacaagaccca |
7015290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 7005584 - 7005520
Alignment:
| Q |
165 |
aaattaagagtaatttatacaaaccacgcactcaactaaccaaggcgtctttcaactaatggcgaaacc |
233 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||| || |||||| |
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|
| T |
7005584 |
aaattaagagtaatttatacaaac----cactcgactaacaaaggtgtctttcaactaagggtgaaacc |
7005520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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