View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19266_high_107 (Length: 234)

Name: NF19266_high_107
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19266_high_107
NF19266_high_107
[»] chr8 (1 HSPs)
chr8 (17-195)||(38653065-38653243)
[»] chr3 (1 HSPs)
chr3 (17-159)||(43490025-43490167)
[»] chr6 (1 HSPs)
chr6 (17-159)||(13409913-13410055)
[»] chr1 (1 HSPs)
chr1 (46-158)||(44331736-44331848)
[»] chr2 (2 HSPs)
chr2 (54-106)||(44648686-44648738)
chr2 (53-101)||(15403640-15403688)
[»] chr4 (2 HSPs)
chr4 (45-106)||(1726249-1726310)
chr4 (54-106)||(2428679-2428731)
[»] chr7 (2 HSPs)
chr7 (48-89)||(6568957-6568998)
chr7 (48-89)||(6583116-6583157)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 38653243 - 38653065
Alignment:
Q  17 agcagagataagagatcctttcaaagctacaagagtatggttaggtacatttgaaacagctgaagatgcagctaaagcctatgatcaagcttcattgcgt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38653243 agcagagataagagatcctttcaaagctacaagagtatggttaggtacatttgaaacagctgaagatgcagctaaagcctatgatcaagcttcattgcgt 38653144  T
Q  117 tttagaggaaacaaagcaaaactcaacttccctgaaaatgttaagctcaagcaacaacaatcaacaccgacccatttga 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38653143 tttagaggaaacaaagcaaaactcaacttccctgaaaatgttaagctcaagcaacaacaatcaacaccgacccatttga 38653065  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 159
Target Start/End: Complemental strand, 43490167 - 43490025
Alignment:
Q  17 agcagagataagagatcctttcaaagctacaagagtatggttaggtacatttgaaacagctgaagatgcagctaaagcctatgatcaagcttcattgcgt 116  Q
    |||||||||||||||||| ||||||||  |||||||||||||||| |||||||||||||||||||  || |||| ||| |||||| ||||| |  | |||    
T  43490167 agcagagataagagatccattcaaagcagcaagagtatggttaggaacatttgaaacagctgaagcagctgctagagcatatgatgaagctgctcttcgt 43490068  T
Q  117 tttagaggaaacaaagcaaaactcaacttccctgaaaatgtta 159  Q
    |||||||| |||||||| |||||||| ||||||||||||||||    
T  43490067 tttagaggcaacaaagccaaactcaatttccctgaaaatgtta 43490025  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 13409913 - 13410055
Alignment:
Q  17 agcagagataagagatcctttcaaagctacaagagtatggttaggtacatttgaaacagctgaagatgcagctaaagcctatgatcaagcttcattgcgt 116  Q
    |||||| |||||||||||   ||||||   |||||||||| |||| ||||| || ||||| |||| ||||||||  || |||||| ||||| ||||| |     
T  13409913 agcagaaataagagatccacacaaagcacaaagagtatggctaggaacattcgacacagcagaagctgcagctagggcttatgatgaagctgcattgaga 13410012  T
Q  117 tttagaggaaacaaagcaaaactcaacttccctgaaaatgtta 159  Q
    || ||||||| || |||||||||||||||||||||||||||||    
T  13410013 ttcagaggaagcagagcaaaactcaacttccctgaaaatgtta 13410055  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 44331848 - 44331736
Alignment:
Q  46 caagagtatggttaggtacatttgaaacagctgaagatgcagctaaagcctatgatcaagcttcattgcgttttagaggaaacaaagcaaaactcaactt 145  Q
    ||||||||||| | || ||||||||||| || |||| |||||| | ||| || ||| ||||| ||||  | || |||||||||| ||| |||||||||||    
T  44331848 caagagtatggcttggaacatttgaaactgcagaagctgcagcaagagcttacgatgaagctgcattaagattcagaggaaacagagcgaaactcaactt 44331749  T
Q  146 ccctgaaaatgtt 158  Q
    |||||||||||||    
T  44331748 ccctgaaaatgtt 44331736  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 44648738 - 44648686
Alignment:
Q  54 tggttaggtacatttgaaacagctgaagatgcagctaaagcctatgatcaagc 106  Q
    |||||||| |||||||||||||||||||| ||||||||||| |||||| ||||    
T  44648738 tggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagc 44648686  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 15403640 - 15403688
Alignment:
Q  53 atggttaggtacatttgaaacagctgaagatgcagctaaagcctatgat 101  Q
    |||||||||||||||||| ||||||||||| ||||||| ||| ||||||    
T  15403640 atggttaggtacatttgacacagctgaagaagcagctagagcttatgat 15403688  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 1726249 - 1726310
Alignment:
Q  45 acaagagtatggttaggtacatttgaaacagctgaagatgcagctaaagcctatgatcaagc 106  Q
    |||||| |||||||||| |||||||||||||| ||||||||||| | ||| |||||| ||||    
T  1726249 acaagaatatggttaggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagc 1726310  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 2428731 - 2428679
Alignment:
Q  54 tggttaggtacatttgaaacagctgaagatgcagctaaagcctatgatcaagc 106  Q
    |||||||| |||||||| ||||||||||| ||||||| ||| |||||| ||||    
T  2428731 tggttaggaacatttgagacagctgaagaagcagctagagcatatgatgaagc 2428679  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 6568957 - 6568998
Alignment:
Q  48 agagtatggttaggtacatttgaaacagctgaagatgcagct 89  Q
    ||||| |||||||| |||||||| ||||||||||||||||||    
T  6568957 agagtttggttaggaacatttgatacagctgaagatgcagct 6568998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 6583116 - 6583157
Alignment:
Q  48 agagtatggttaggtacatttgaaacagctgaagatgcagct 89  Q
    ||||| |||||||| |||||||| ||||||||||||||||||    
T  6583116 agagtttggttaggaacatttgacacagctgaagatgcagct 6583157  T

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