View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_high_114 (Length: 220)
Name: NF19266_high_114
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_114 |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 41581071 - 41580885
Alignment:
| Q |
18 |
atgaaagggagttacaaaagtaaaagcacttaaaaaa-ttcatgataacaatctggacttcacaaagcttgaacaaattaataggcttattctcttacac |
116 |
Q |
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| T |
41581071 |
atgaaagggagttccaaaagtaaaagcacttaaaaaaattcatgataacaatctggacttcacaaagcttgaacaaattaataggcttattctcttacac |
41580972 |
T |
|
| Q |
117 |
tttgttttagaaggatctctccaagactgctgttnnnnnnnnnnnnntctccttagtcctttcaactgggttaagattcacatttat |
203 |
Q |
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||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41580971 |
tttgttttagaaggatctcaccaagactgttgttcacacacacacactctccttagtcctttcaactgggttaagattcacatttat |
41580885 |
T |
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