View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_high_117 (Length: 213)
Name: NF19266_high_117
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_117 |
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| [»] chr7 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 38707834 - 38708046
Alignment:
| Q |
1 |
ccttggtccaaatggtgttggtaaaacagaacttgctaaggctcttgctcaataactctttgctgatgaaaatcatatgattagacttgacatgtcggaa |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38707834 |
ccttggtccaaatagtgttggtaaaacagaacttgctaaggctcttgctcaataactctttgctgatgaaaatcatatgattagactcgacatgtcggaa |
38707933 |
T |
|
| Q |
101 |
tacatggaaaaagactctatcaagattgattggtgcaacaccagggtaagatattgtattaacaactgcatttgattatagtaaaggcctaaattatact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38707934 |
tacatggaaaaagactctatcaagattgattggtgcaccaccagggtaagatattgtatcaacaactgcatttgattatagtaaaggcctaaattatact |
38708033 |
T |
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| Q |
201 |
tggagataaaaca |
213 |
Q |
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||||||||||||| |
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| T |
38708034 |
tggagataaaaca |
38708046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 10046042 - 10046254
Alignment:
| Q |
1 |
ccttggtccaaatggtgttggtaaaacagaacttgctaaggctcttgctcaataactctttgctgatgaaaatcatatgattagacttgacatgtcggaa |
100 |
Q |
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||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||| | |||||||||| ||| |||||||||||||||||||| |
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| T |
10046042 |
ccttggtccaactggtgtcggtaaaacagaacttgctaaggctcttgctcaacaactctttgataatgaaaatcagatggttagacttgacatgtcggaa |
10046141 |
T |
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| Q |
101 |
tacatggaaaaagactc--tatcaagattgattggtgcaacaccagggtaagatattgtattaacaactgcatttgattatagtaaaggcctaaattata |
198 |
Q |
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| T |
10046142 |
tacatggagaaatactccgtatcaagattgattggtgcaccaccagggtaagatattgtatttttagctgcatttgattatagtaaaagcctaaattaaa |
10046241 |
T |
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| Q |
199 |
cttggagataaaa |
211 |
Q |
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|| |||||||||| |
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| T |
10046242 |
ctaggagataaaa |
10046254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 42449992 - 42449777
Alignment:
| Q |
1 |
ccttggtccaaatggtgttggtaaaacagaacttgctaaggctcttgctcaataactctttgctgatgaaaatcatatgattagacttgacatgtcggaa |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| | |||| |||| |||||||||||| || | ||| | |||||||||| |
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| T |
42449992 |
ccttggtccaactggtgttggtaaaacagaacttgctaaggctcttgctgagcaactatttgatgatgaaaatcagttggtgagaatgaacatgtcggag |
42449893 |
T |
|
| Q |
101 |
tacatggaaaaagac--tctatcaagattgattggtgcaacaccagggtaagatattgtattaacaactgcatttgattatagtaaaggcctaaatt-at |
197 |
Q |
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||||||||| || || ||| ||||||||||||| |||| |||||| ||||| ||||| | || |||||| |||||||||||||||| | ||||||| || |
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| T |
42449892 |
tacatggaacaacactatctgtcaagattgattgatgcagcaccagagtaagttattggactagcaactgaatttgattatagtaaaaggctaaattaat |
42449793 |
T |
|
| Q |
198 |
acttggagataaaaca |
213 |
Q |
| |
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|||| ||||||||||| |
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| T |
42449792 |
actttgagataaaaca |
42449777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 742736 - 742585
Alignment:
| Q |
1 |
ccttggtccaaatggtgttggtaaaacagaacttgctaaggctcttgctcaataactctttgctgatgaaaatcatatgattagacttgacatgtcggaa |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||||||||| || ||||||||| ||||||||| || || | ||| | |||||||||| |
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| T |
742736 |
ccttggtccaactggtgttggtaaaacagaacttgctaaagctcttgctgaacaactctttgatgatgaaaaccagttggtgagaatgaacatgtcggag |
742637 |
T |
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| Q |
101 |
tacatggaaaaagac--tctatcaagattgattggtgcaacaccagggtaag |
150 |
Q |
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||||||||| || || | | || |||||||||| |||| |||||||||||| |
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| T |
742636 |
tacatggaacaacactatgtgtccagattgattgatgcagcaccagggtaag |
742585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 45467895 - 45468051
Alignment:
| Q |
1 |
ccttggtccaaatggtgttggtaaaacagaacttgctaaggctcttgctcaataactctttgctgatgaaaatcatatgattagacttgacatgtcggaa |
100 |
Q |
| |
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||||||||| | ||||||||||||||| || ||||| ||||||||||| | | || |||| |||||||||||| || | ||| |||||||||||||| |
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| T |
45467895 |
ccttggtccgactggtgttggtaaaactgagcttgcaaaggctcttgcagagcagctatttgatgatgaaaatcagttggtgagaattgacatgtcggaa |
45467994 |
T |
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| Q |
101 |
tacatggaaaaagactct--atcaagattgattggtgcaacaccagggtaagatatt |
155 |
Q |
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||||||||| || ||||| ||||||||||||||||||| |||||||||||| |||| |
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| T |
45467995 |
tacatggaacaacactctgtatcaagattgattggtgcaccaccagggtaagttatt |
45468051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 43064766 - 43064658
Alignment:
| Q |
1 |
ccttggtccaaatggtgttggtaaaacagaacttgctaaggctcttgctcaataactctttgctgatgaaaatcatatgattagacttgacatgtcggaa |
100 |
Q |
| |
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||||||||||| ||||||||||||||| |||||||| | ||||||||| || |||| ||| ||||||||||| | ||||| |||||||||||||| |
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| T |
43064766 |
ccttggtccaattggtgttggtaaaactgaacttgcaatggctcttgcagaacaacttcttgatgatgaaaatcggttagttagaattgacatgtcggaa |
43064667 |
T |
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| Q |
101 |
tacatggaa |
109 |
Q |
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||||||||| |
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| T |
43064666 |
tacatggaa |
43064658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 43065081 - 43065189
Alignment:
| Q |
1 |
ccttggtccaaatggtgttggtaaaacagaacttgctaaggctcttgctcaataactctttgctgatgaaaatcatatgattagacttgacatgtcggaa |
100 |
Q |
| |
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|||| |||||| ||||||||||||||| | |||||| |||||||||| || |||| |||| ||||||||||| | | ||| || ||||||||||| |
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| T |
43065081 |
cctttgtccaactggtgttggtaaaactggacttgcaaaggctcttgtggaacaactttttgatgatgaaaatcggttagtgagaattaacatgtcggaa |
43065180 |
T |
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| Q |
101 |
tacatggaa |
109 |
Q |
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||||||||| |
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| T |
43065181 |
tacatggaa |
43065189 |
T |
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