View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_high_12 (Length: 487)
Name: NF19266_high_12
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 17 - 474
Target Start/End: Original strand, 56188341 - 56188806
Alignment:
| Q |
17 |
aatttctaattcacccaataacaactctttggcatcctaaataaattgctccaagcaggagccggtcacaaatctcctatgtaaattaactgctccatgc |
116 |
Q |
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| T |
56188341 |
aatttctaattcacccaataacaactctttgaaatactaaataaattgctccaagcaggagccggtcacaaatctcctatgtaaattaactgctccatgc |
56188440 |
T |
|
| Q |
117 |
aagagtcggtcacaaatccccctatggaatccaaagatcgtggatggtataaataggcatagatccaaagattgaaacatgtgagtcagtgtttttgaga |
216 |
Q |
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| T |
56188441 |
aagagtcggtcacaaatccccctacggaatccaaaggtcgtggatggtataaataggcatagatccaaagattgaaacatgtgagtcagtgtttttgaga |
56188540 |
T |
|
| Q |
217 |
tcaaagaggatgtttgcaggtaaaaattgaagagaaggagaagagcagtaattcattatcatatcagccaacagttttattagctgatcatattaagtat |
316 |
Q |
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| T |
56188541 |
tcaaagaggatgtttgcaggtaaaaattgaagagaaggagaagagcagtaattcattatcatatcagccaacagttttattagctgatcatattaagtat |
56188640 |
T |
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| Q |
317 |
tgtgcatgataacaggtccaactcattgccaatattattctgtaaaataggccactaatttaactttt--------ctaggagtcgttgatatcagaaat |
408 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
56188641 |
tgtgcatgataacaggtcgaactcattggcaatattattctgtaaaataggccactaatttaacttttttaagtggctaggagtcattgatatcagaaat |
56188740 |
T |
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| Q |
409 |
tgatgatggaacttgatcattaatttttaagtccctgatggcctggaatttgtaatgtacccgcct |
474 |
Q |
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| T |
56188741 |
tgatgatggaacttgatcattaatttttaagcctctgatggcctggagtttgtaatgtacccgcct |
56188806 |
T |
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