View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_high_13 (Length: 481)
Name: NF19266_high_13
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 202 - 472
Target Start/End: Original strand, 31797184 - 31797454
Alignment:
| Q |
202 |
aattggtcatttgtcatggcatgtttcaatcctgaaacgggggagtatcaaagtgtatgccgagttatctttgggttcaccgtctctttttacataagac |
301 |
Q |
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| T |
31797184 |
aattggtcatttgtcatggcacgtttcaatcctgaaacgggggagtatcaaggtgtatgccgagttatgtttgggttcaccgtctctttttacataagac |
31797283 |
T |
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| Q |
302 |
atacaagtagttttgacatatcctttgaaatattctgggcatgctaatcatgtatccatggtagaagatgcagaatcctctagaattttacgagttagta |
401 |
Q |
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| T |
31797284 |
gtacaagtagttttgacaactcctttgaaatattctgagcatgctaatcatgtatccatggtagaagatgcagaatcctctagacttttacgagttagta |
31797383 |
T |
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| Q |
402 |
gtcattactcttgatgattatctacctagttttggccttgtatgagcaataatgcagtattctgatgatgt |
472 |
Q |
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| T |
31797384 |
gtcattactcttgatgattatctacctagttttggccttgtatgagcaataatgcagtattctgatgatgt |
31797454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 31796969 - 31797155
Alignment:
| Q |
19 |
aaaggaaagcagatgaatataggcattgctaannnnnnnnagtaatatttaacagtcagattattcgtgttgagcagttgataatgcgtttcaaatacag |
118 |
Q |
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| T |
31796969 |
aaaggaaagcagatgaatataggcattgctaattttttttagtaatatttaacagtcagattattcgtgttgagcagttgataatgcgtttcaaatacag |
31797068 |
T |
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| Q |
119 |
tcttgctgatccattgaagtactgtttacaagttactgggttttcctttctgcctaagacgaaagtgtatgcatctggtcacaaatt |
205 |
Q |
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| T |
31797069 |
tcttgctgatccattgaagtactgtttacaagttactgggttttcctttctgcctaagacgaaagtgtatgcatctggtcacaaatt |
31797155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 209 - 376
Target Start/End: Original strand, 31791048 - 31791214
Alignment:
| Q |
209 |
catttgtcatggcatgtttcaatcctgaaacgggggagtatcaaagtgtatgccgagttatctttgggttcaccgtctctttttacataagacatacaag |
308 |
Q |
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| T |
31791048 |
catttctcatggcatgtttcaatcctgaaactgaagagtatcaaagtgtgtgccgagtaatgtctgggttcacagactctttttacatt-gaggtacaag |
31791146 |
T |
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| Q |
309 |
tagttttgacatatcctttgaaatattctgggcatgctaatcatgtatccatggtagaagatgcagaa |
376 |
Q |
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| T |
31791147 |
tagttttgacatatcctttgaaatattctgggcatgctaatcatgcatctatggtagaagatgcagaa |
31791214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 76 - 197
Target Start/End: Original strand, 31789762 - 31789883
Alignment:
| Q |
76 |
agattattcgtgttgagcagttgataatgcgtttcaaatacagtcttgctgatccattgaagtactgtttacaagttactgggttttcctttctgcctaa |
175 |
Q |
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| T |
31789762 |
agattatttgtttttagcagttgatattgtgtttcatatacagtcttgctgatccattgaagtactgtttgcaggttactgggtttccctctccgcctaa |
31789861 |
T |
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| Q |
176 |
gacgaaagtgtatgcatctggt |
197 |
Q |
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| T |
31789862 |
gacgaaagtgtatgcatctggt |
31789883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 422 - 472
Target Start/End: Original strand, 31786007 - 31786057
Alignment:
| Q |
422 |
tctacctagttttggccttgtatgagcaataatgcagtattctgatgatgt |
472 |
Q |
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| T |
31786007 |
tctacctagttttggccttgtatgagcaataatgcagtattctgatgatgt |
31786057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 375
Target Start/End: Original strand, 31799810 - 31799879
Alignment:
| Q |
306 |
aagtagttttgacatatcctttgaaatattctgggcatgctaatcatgtatccatggtagaagatgcaga |
375 |
Q |
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| T |
31799810 |
aagtagttttgacatatcctttaaaatactatgggcatgttaattatgtatctgtgttagaagatgcaga |
31799879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 31804266 - 31804302
Alignment:
| Q |
169 |
tgcctaagacgaaagtgtatgcatctggtcacaaatt |
205 |
Q |
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| T |
31804266 |
tgcctaagaagaaagtgtatgcatctggtcaccaatt |
31804302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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