View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_high_15 (Length: 479)
Name: NF19266_high_15
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 11 - 460
Target Start/End: Complemental strand, 44332865 - 44332411
Alignment:
| Q |
11 |
cagagagttcagaggtggcttcgaacccaaagcgaggtgaataaatagaagggacaggctctgactaggatgtatccaaacaatttcaag-ttttagtga |
109 |
Q |
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| T |
44332865 |
cagagagttcagaggtggcttcgaacccaaagcgaggtgaataaatagaagggacaggctctgactaggatgtatccaaacaatttcaagcttttagtga |
44332766 |
T |
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| Q |
110 |
tcaactgatcagatataatgtcaaaagcatgatgtaattagcacccataaactata----gaatctcaacagtattaacagccatgttgtgaactataaa |
205 |
Q |
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| T |
44332765 |
tcaactgatcagatataatgtcaaaagcatgatgtaattagcacccataaactatatatagaatctcaacagtattaacagccatgttgtgaactataaa |
44332666 |
T |
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| Q |
206 |
atcttccacaataatctgaatataacaacttttttgtttatcctctggtgttagaagttagaacatagtttaatgaaaagaaagagcaaagaattccttg |
305 |
Q |
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| T |
44332665 |
atcttccacaataatctaaatataacaacttttttgtttatcctctggtgttagaagttagaacatagtttaatgaaaagaaagagcaaagaattccttg |
44332566 |
T |
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| Q |
306 |
cctgcatgaaagtcaaagatgtcttcttctgagtaacaaaaaccaccacgagcggtaaaacagtatctaatacgagagagagaaatatttagtgatcaag |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44332565 |
cctgcatgaaagtcaaagatgtcttcttctgagtaacaaaaaccaccacgagcggtaaaacagtatctaatacgagagagagaaatatttagtcatcaag |
44332466 |
T |
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| Q |
406 |
cacaatagttaattttataactttctttgtcgtgagaaaagactgacataggcat |
460 |
Q |
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| T |
44332465 |
cacaatagttaattttataactttctttgtcatgaaaaaagactgacataggcat |
44332411 |
T |
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