View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_high_16 (Length: 469)
Name: NF19266_high_16
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 458
Target Start/End: Original strand, 30398067 - 30398505
Alignment:
| Q |
19 |
atatgagtagggacttgcaagatgggtactgagaaagaaatgatgtgcagtgcggttgtaagaatgtcgtctgtggacaagaaataatctttttaggaac |
118 |
Q |
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| T |
30398067 |
atatgagtagggacttgcaagatgggtactgagaaagaaatgatgtgcggtgcggttgtaagaatgtcgtctgtggacaagaaataatctttttaggaac |
30398166 |
T |
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| Q |
119 |
ctaaactctgcaaaattaagacgaaaaaagagtcatattgaagatgaaatgtcacagtcatctgcaaataatataagcatggtgcatgcagataaagttg |
218 |
Q |
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| T |
30398167 |
ctaaactctgcaaaattaagacgaaaa-agagtcatattgaagatgaaatgtcacagtcatctgcaaataatataagcatggtgcatgcagataaagttg |
30398265 |
T |
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| Q |
219 |
tataacaaacctgtgattttgtgatgtgtcatatgacatcatttagcaatcctttacaatatcgtcagctcggtaaaagcttcgcggtagtgcttaagcg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30398266 |
tataacaaacctgtgattttgtgatgtgtcatatgacatcatttagcaatcctttacaatatcgtcagctcggtaaaagcttcgcggtagtgcttaagcg |
30398365 |
T |
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| Q |
319 |
caatcacaagagcacagccatcaataacaaaagccgcatcctgtttgagaaaggaaaagnnnnnnnngataaacttcaaaccattttaaattatcttgct |
418 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
30398366 |
caatctcaagagcacagccatcaataacaaaagccgcatcctgtttgagaaaggaaaagaacaaaaagataaacttgaaaccattttaaattatcttgct |
30398465 |
T |
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| Q |
419 |
cccaaagcatgcatgcatagccagttcaattaagcatatt |
458 |
Q |
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| T |
30398466 |
cccaaagcatgcatgcatagccagttcaattaagcatatt |
30398505 |
T |
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