View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_high_20 (Length: 438)
Name: NF19266_high_20
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 17 - 431
Target Start/End: Complemental strand, 3101778 - 3101365
Alignment:
| Q |
17 |
agaatcatatgtgctctctaggcgaccgatcaattgttgagaaatatagatatcatgttgtgtcactagaagataatcacataattaattttcatttaag |
116 |
Q |
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| T |
3101778 |
agaatcatatgtgctctctaggcgaccgatcaattgttgagaaatatagatatcatgttgtgtcactagaagataatcacataattaattttcatttaag |
3101679 |
T |
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| Q |
117 |
nnnnnnntcattttgcctctttaaaaaattgaataatatatatttgattttatatgggttgccaatatatgaacttccttaaaatatcaaatagaagatt |
216 |
Q |
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| T |
3101678 |
aaaaaaatcattttgcctctttaaaaaattgaataatatatatttgattttatatgggttgccaatatatgaacttccttaaaatatcaaatagaa-att |
3101580 |
T |
|
| Q |
217 |
tattcactaagcttgtagtcctaattaatcactactattatctttgcatttgtttatatcaaaaaataataatcttttcaattcccttcctaattacaaa |
316 |
Q |
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| T |
3101579 |
tattcactaagcttgtagtcctaattaatcactattattatctttgcatttgtttatatcaaaaaataataatcttttcaattcccttcctaattacaaa |
3101480 |
T |
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| Q |
317 |
atgctaatagtcaaaagagaaacaaatgaaaataaaaaaccatagt--tgtactccatgtttcagtttgtttgattgcttttcctacttgacttagtatg |
414 |
Q |
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| T |
3101479 |
atgctaatagtcaatagagaaacaaatgaaagtaaagaaccatagttctatactccttgtttcattttgtttgattgcttttcgtacttgatttag--tg |
3101382 |
T |
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| Q |
415 |
cgacccaacaacctttg |
431 |
Q |
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| T |
3101381 |
cgaccaaacaacctttg |
3101365 |
T |
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