View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_high_26 (Length: 424)
Name: NF19266_high_26
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 87 - 413
Target Start/End: Complemental strand, 35273157 - 35272831
Alignment:
| Q |
87 |
gaggtggggggcaaggccccattgttacactgccctttacccctgtctcaccttctcctttccagtaaatgcagcacaatctagagtatcagagtatatt |
186 |
Q |
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| T |
35273157 |
gaggtggggggcaaggccccattgttacactgccctttacccctgtctcaccttctcctttccagtaaatgcagcacaatctagagtatcagagtatatt |
35273058 |
T |
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| Q |
187 |
acttcctaattgttagccaacagttttagtcagctttgctagctgtatctgagttgtacttgtattacagtaagacagttctgtgtttactgttactatt |
286 |
Q |
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| T |
35273057 |
acttcctaattgttagccaacagttttagtcagctttgctagctgtatctgagttgtacttgtatcacagtaagacagttctgtgttaactgttactatt |
35272958 |
T |
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| Q |
287 |
agaaagttagggcttagttagatagtagtttcttacaagcagctactttgagttgctacaaataccttctatgaaactgaaactcgtcattaaaatcact |
386 |
Q |
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| T |
35272957 |
agaaagttagggcttagttagatagtagtttcttacaagcagctactttgagttgctacaaataccttctatgaaactgaaactcgtcattaaaatcact |
35272858 |
T |
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| Q |
387 |
ttcatctaataaaagtttctgacctat |
413 |
Q |
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|||||||||| |||||||||||||||| |
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| T |
35272857 |
ttcatctaatcaaagtttctgacctat |
35272831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 35273235 - 35273189
Alignment:
| Q |
18 |
aatattagagtaatgaaatataaaagtatgccaacttattcaacaac |
64 |
Q |
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| T |
35273235 |
aatattagagtaatgaaatataaaagtatgccaacttattcaacaac |
35273189 |
T |
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