View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_high_28 (Length: 408)
Name: NF19266_high_28
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 8 - 366
Target Start/End: Complemental strand, 2065522 - 2065171
Alignment:
| Q |
8 |
ccccatgtatcatgtattattttttatcagatgagctaagctaacagaagaacaatacaaacattttaatgcgaagagtatatggaaggagtatcaacca |
107 |
Q |
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| T |
2065522 |
ccccatatatcatgtattattttttatcagatgagttaagctcacagaacaagag-----acattttaacgtgaagagtatagggaaggagtatcaacca |
2065428 |
T |
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| Q |
108 |
cacaccaagaaagagatgcatactaatgtgaacagcnnnnnnnnnnngtgaacagtgtatctctctttcttaaacaaaaaacctgaacacatttacttct |
207 |
Q |
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| T |
2065427 |
cacaccaagaaagagatgcatactaatgtgaacagcaaaaaaaaa--gtgaacagtgtatctctctttcttacacaaaaaacctgaacgcatttacttct |
2065330 |
T |
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| Q |
208 |
gtacattcaatcaaataaattccatttccccaactccatccattaacattcaattcatggacccaattcctcacatgccactcacgtgccctctccctct |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2065329 |
gtacattcaatcaaataaattccatttccccaactccatccattaacattcaattcatgtacccaattcctcacatgccactcacgtgccctctccctct |
2065230 |
T |
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| Q |
308 |
cctatcctattttctcaaaccaaaacaaaattacacttaaaacattttcatgcacaaca |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2065229 |
cctatcctattttctcaaaccaaaacaaaattacacttaaaacattttcatgcacaaca |
2065171 |
T |
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