View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_high_34 (Length: 373)
Name: NF19266_high_34
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 6 - 356
Target Start/End: Complemental strand, 8154194 - 8153844
Alignment:
| Q |
6 |
agagatgaaaatatttgaaagtcaagagagcgtagagagcaacaacaaactaaaacatgaccacaagagacagagacgtcgatcatatatctatccaaaa |
105 |
Q |
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| T |
8154194 |
agagaagaaaatatttggaagtcaagagagcgtggagagcaacaacaaactaaaacatgaccacaagagacagagacgtcgatcatatatctatccaaaa |
8154095 |
T |
|
| Q |
106 |
catctctcgtatatcaaatatttagttcattcacggactaatactcacacttgaactcaacacatgaagtagatgtttctagatatgaggaaggtgaaga |
205 |
Q |
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| T |
8154094 |
catctctcgtatatcaaatatttagttcattcatggactaatactcacacttgaactcaacacatgaagtagatgtttctagatatgaggaaggtgaaga |
8153995 |
T |
|
| Q |
206 |
ggaagtttgaagtgaagttgtgatgccggcgagcgatccgccacgccgtgccaacagattccacctttacaataagacatggtattgtgttgggaagtac |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8153994 |
ggaagtttgaagtgaagttgtgatgccggcgagcgatccgccacgccgtgccaacagattccacctttacaataagacatggtattgtgttgggaagtac |
8153895 |
T |
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| Q |
306 |
gaggatgttggtcgacaaaaacacacttactaatcttccgagacaaatccc |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8153894 |
gaggatgttggtcgacaaaaacacacttactaatcttccgagacaaatccc |
8153844 |
T |
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