View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19266_high_35 (Length: 372)
Name: NF19266_high_35
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_35 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 49 - 354
Target Start/End: Original strand, 6145135 - 6145441
Alignment:
| Q |
49 |
aaattaagagaatgtggtactttt-gcattgaaaatactcataattttcttgtgaaatattacatataatctttatagagataaatagaaaactcttgac |
147 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6145135 |
aaattaagagaatgtggtactttttgcattgaaaatactcataattttcttgtgaaatattacatataatctttatagagataaatagaaaactcttgac |
6145234 |
T |
|
| Q |
148 |
ttgaatcataagcaaccacaatattctatgattattcttcaaatcagttcaaagcaaagtaactaacacagaattaaaaaccaattttacacattataca |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||| |
|
|
| T |
6145235 |
ttgaatcataagcaaccacaatattctatgattattcttcaaatcagttcaaagcaaagtaactaacacacaattaaaaaccaaatttacatattataca |
6145334 |
T |
|
| Q |
248 |
actttactacatgcaaacatatatagtattccagccatcattagatgaaattttagaatttaatcaatgtaaaattaagaactaattcacaccattctct |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6145335 |
actttactacatgcaaacatatatagtattccagccatcattagatgaaattttagaatttaatcaatgtaaaattaagaactaattcacaccattctcc |
6145434 |
T |
|
| Q |
348 |
ctgctcc |
354 |
Q |
| |
|
||||||| |
|
|
| T |
6145435 |
ctgctcc |
6145441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University