View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_high_37 (Length: 361)
Name: NF19266_high_37
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 346
Target Start/End: Complemental strand, 32224788 - 32224463
Alignment:
| Q |
19 |
atttactatcaccaacataagacataatatccaacaatgcttttaaaggatccatgcaataaaaaagaacataaaataatgtttccttaattataagtaa |
118 |
Q |
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| T |
32224788 |
atttactatcaccaacataagacataatatccaacaatgcttttaaaggatccatgcagtaaaaacgaacataaaataatgtttccttaattataagtaa |
32224689 |
T |
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| Q |
119 |
catgtctagggggctttaatccttgcccttaaatcaataacaaaaattgaacctcggaccattggattggatcgtcttaaatatgctcaggatcaaacat |
218 |
Q |
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|||||||||||| |||||||||||||||| || ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||| |||||| |
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| T |
32224688 |
catgtctagggg-ctttaatccttgccct-aattcaataacaaaaattgaacatcggatcattggattggatcgtcttaaatgtgctcaggattaaacat |
32224591 |
T |
|
| Q |
219 |
actattcgattgaaatccgaagcatttgattggatcgtcttcttctagtaaacattcaacgactagcttgagattttttaccttgtaacatctcaacggc |
318 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||| |
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| T |
32224590 |
actattcgattgaaatccgaagcattggattggatcgtcttcttctagtaaacatccaacgactagcttgagatttttcactttgtaacatctcaacggc |
32224491 |
T |
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| Q |
319 |
tcataagagatgtcaactcgacattgat |
346 |
Q |
| |
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|||||| |||||||| |||||||||||| |
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| T |
32224490 |
tcataacagatgtcagctcgacattgat |
32224463 |
T |
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