View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_high_4 (Length: 669)
Name: NF19266_high_4
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 544; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 1 - 655
Target Start/End: Complemental strand, 41805975 - 41805315
Alignment:
| Q |
1 |
tatatgataaaatgtaaaataaaaagcatcaaagacgggtaagaactggaaaattttgatagtgggacatgttaacccaacgttctatactgaacaaaac |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41805975 |
tatatgataaaatgtaaaataaaaagcatcaaagacgggtaagaactggaaaattttgatagtgggacatgttaacccagcgttctatactgaacaaaac |
41805876 |
T |
|
| Q |
101 |
aataagacgtcactaagattattcaattcaaattcaagagaagaacagaactaactttg------atacagggnnnnnnntataactatacacatactca |
194 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
41805875 |
aataagacgtcactaagattattcaattcaaattcaagagaagaacagaactaactttgctactgatacagggaaaaaaatataactatacacatactca |
41805776 |
T |
|
| Q |
195 |
tgtttgtcaaatcacgacagtacctaattggacaaagttgcatnnnnnnnntatagatgggttcacattgctctctggccccggcgagtctttgatatga |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41805775 |
tgtttgtcaaatcacgacagtacctaattggacaaagttgcataaaaaaaatatagatgggttcacactgctctctggccccggcgagtctttgatatga |
41805676 |
T |
|
| Q |
295 |
attcctttagatagtcattgcgctccctgtgataatcaatccgcaaacaaagctgcctgatggcctccctcttttcctctcccaagttcaacataccctc |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41805675 |
attcctttagatagtcattgcgctccctgtgataatcaatccgcaaacaaagctgcctgatggcctccctcttttcctctcccaagttcaacataccctc |
41805576 |
T |
|
| Q |
395 |
ctctttctcttccatcaacttctctagctcttcaactcacttcttaagttcaacaacaattgttgtcacattcatcttctctga-ttccccctttcttgc |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41805575 |
ctctttctcttccatcaacttctctagctcttcaactctcttcttaagttcaacaacaattgttgtcacattcatcttctctgatttccccctttcttgc |
41805476 |
T |
|
| Q |
494 |
ctttgcctctagcttttcaaccttttccctcagagttaattcctcttcccttttaccctgcagctcctccaacaaatggnnnnnnnatctgtctgtaact |
593 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41805475 |
ctttgcctctagcttttcaaccttttccctcagagttaattcctcttcccttttaccctgcagctcctccaacaaatgg-ttttttatctgtctgtaact |
41805377 |
T |
|
| Q |
594 |
gcctcctttccttgttcatcttattgatatattcttttgtaacctgaagctcatgtgagatg |
655 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41805376 |
gcctcttttccttgttcatcttattgatatattcttttgtaacctgaagctcatgtgagatg |
41805315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 265 - 669
Target Start/End: Complemental strand, 41812535 - 41812133
Alignment:
| Q |
265 |
ctctctggccccggcgagtctttgatatgaattcctttagatagtcattgcgctccctgtgataatcaatccgcaaacaaagctgcctgatggcctccct |
364 |
Q |
| |
|
|||||||||||| |||||||||| |||| | |||| |||||| |||| | ||| | ||||||||||||| |||||| |||||||||||||||||||| |
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|
| T |
41812535 |
ctctctggcccctttgagtctttgagatgattcccttgagatagacattacactcgcggtgataatcaatcaacaaacagagctgcctgatggcctccct |
41812436 |
T |
|
| Q |
365 |
cttttcctctcccaagttcaacataccctcctctttctcttccatcaacttctctagctcttcaactcacttcttaagttcaacaacaattgttgtcaca |
464 |
Q |
| |
|
||||||||||||||| | ||| || || ||||||||||||| |||||||||| ||||||||||||| ||||||||||||| ||||| ||| ||||||| |
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| T |
41812435 |
cttttcctctcccaaatccaatattccttcctctttctcttttatcaacttctgtagctcttcaactgtcttcttaagttcatcaacagttgctgtcaca |
41812336 |
T |
|
| Q |
465 |
ttcatcttctctgattccccctttcttgcctttgcctctagcttttcaaccttttccctcagagttaattcctcttcccttttaccctgcagctcctcca |
564 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| || | ||||||| || |||||||| |||||||||||| |||||||| |
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|
| T |
41812335 |
ttcatcttctctgattcctcctttcttgcctttgcctctagcttttcaacctctttctgcagagttgatccctcttcctttttaccctgcaactcctcca |
41812236 |
T |
|
| Q |
565 |
acaaatggnnnnnnnatctgtctgtaactgcctcctttccttgttcatcttattgatatattcttttgtaacctgaagctcatgtgagatgtttgagatg |
664 |
Q |
| |
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| |||||| ||||||||||||||||| | ||||| | |||||| ||||| | ||||||||| |||||||||||| | |||||||||||||||| |
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| T |
41812235 |
ataaatgg--tttttatctgtctgtaactgccccttttccctactcatctcattgacagattcttttgcaacctgaagctcgtatgagatgtttgagatg |
41812138 |
T |
|
| Q |
665 |
cggtt |
669 |
Q |
| |
|
||||| |
|
|
| T |
41812137 |
cggtt |
41812133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 263 - 660
Target Start/End: Complemental strand, 41799321 - 41798926
Alignment:
| Q |
263 |
tgctctctggccccggcgagtctttgatatgaattcctttagatagtcattgcgctccctgtgataatcaatccgcaaacaaagctgcctgatggcctcc |
362 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||| |||||| ||| |||| | | ||| | |||||||||||||| |||||| |||||||||||||||||| |
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|
| T |
41799321 |
tgctctctggcccctgcgtgtctttgatatgatttccttgagacggtcactactctcacggtgataatcaatccacaaacagagctgcctgatggcctcc |
41799222 |
T |
|
| Q |
363 |
ctcttttcctctcccaagttcaacataccctcctctttctcttccatcaacttctctagctcttcaactcacttcttaagttcaacaacaattgttgtca |
462 |
Q |
| |
|
||||||||||||||||| | ||| || || ||||||||||||| |||| |||||||||||||| ||||| ||||||||||||||||||| ||| ||||| |
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| T |
41799221 |
ctcttttcctctcccaaatccaatatgccttcctctttctctttcatcgacttctctagctctccaactgtcttcttaagttcaacaacagttgctgtca |
41799122 |
T |
|
| Q |
463 |
cattcatcttctctgattccccctttcttgcctttgcctctagcttttcaaccttttccctcagagttaattcctcttcccttttaccctgcagctcctc |
562 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||| ||||| |
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|
| T |
41799121 |
cattcatcttctctgattcctcctttcttgccttcacctctagcttctcaaccttttccctcagagttaattccccttcctttttaccctgcagttcctc |
41799022 |
T |
|
| Q |
563 |
caacaaatggnnnnnnnatctgtctgtaactgcctcctttccttgttcatcttattgatatattcttttgtaacctgaagctcatgtgagatgtttga |
660 |
Q |
| |
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|||||| |||| |||||||||||| | | || | |||||||| ||| | ||||||||| ||||||||||||||| ||||||||||| |
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|
| T |
41799021 |
taacaaa--caatctttatctctctgtaactgccccttcaccctattcatcttgctgacagattcttttgcaacctgaagctcatgggagatgtttga |
41798926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 41799633 - 41799488
Alignment:
| Q |
10 |
aaatgtaaaataaaaagcatcaaagacgggtaagaactggaaaattttgatagtgggacatgttaacccaacgttctatactgaacaaaacaataagacg |
109 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||| ||| ||| ||| ||||||||||| | |||| || ||||||||||||||||||||||| |
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|
| T |
41799633 |
aaatgtaaaataaaa-gcatcaaagacgggtaagaattggcaaaatttaataatgggacatgttcatccaaatttgtatactgaacaaaacaataagacc |
41799535 |
T |
|
| Q |
110 |
tcactaagattattcaattcaaattcaagagaagaacagaactaact |
156 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
41799534 |
tcactaagattattcaattcaaattcaagagaagaacaggactaact |
41799488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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