View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_high_47 (Length: 338)
Name: NF19266_high_47
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_47 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 33480760 - 33481011
Alignment:
| Q |
1 |
aaaaaattcaggtgttgtaaattttgaatgatttttccattctatattgattcgcttaatcttgacataacatacattttttgttggcgattgaaaattt |
100 |
Q |
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| T |
33480760 |
aaaaaattcaggtgttgtaaattttgaatgatttttccattctatattaattcacttaatcttgacacaacatacattttttgttggcgattgaaaattt |
33480859 |
T |
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| Q |
101 |
tatacataagctttatacattgctcttatcgactaacataacacaaaacgtaaacttatgaactatgaagaaagttctaagcctattagacctattcaac |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33480860 |
tatagataagctttatacattgctcttatcgactaacataacacaaaacgtaaacttatgaactatgaagaaagttctaagcctattagacctattcaac |
33480959 |
T |
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| Q |
201 |
ctaaacatagcaaaaacgtttgcaaatttgtttgcctcacgatagacgtgtt |
252 |
Q |
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| T |
33480960 |
ctaaacatagcaaaaacgtttgcaaatttgtttgcctcacgataaacgtgtt |
33481011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 246 - 335
Target Start/End: Original strand, 33485145 - 33485234
Alignment:
| Q |
246 |
acgtgttatatcatgtgtataatttttataatttcgttcatcgatataatatcgtttggtatgttatcggtggcggatcttgaatatatt |
335 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
33485145 |
acgtgttatatcatgtgtataatttttataatttcattcatcgatataatatcgtttggtatgttatcagtggcagatcttgaatatatt |
33485234 |
T |
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