View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_high_48 (Length: 337)
Name: NF19266_high_48
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_48 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 20 - 319
Target Start/End: Complemental strand, 5187829 - 5187530
Alignment:
| Q |
20 |
gaaggagttatggaatttgcttgttatagttcaaacattaatcaactagcagacatcaagactaaacctttgaagctagaagtatttttcaaacaagggg |
119 |
Q |
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| T |
5187829 |
gaaggagttatggaatttgcttattatagttcaaacattaatcaaccagcagacatcaagactaaacctttgaagctagaagtatttttcaaacaagggg |
5187730 |
T |
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| Q |
120 |
agtgattgttaggtatataacattgttttattctcattagtctgttagttagttatggacttagttgtttagcaagtaagctagtttgttatcaactaac |
219 |
Q |
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| T |
5187729 |
agtgattgttaggtatataacattgttttattctcattagtctgttagttagttatggacttacttgtttggcaagtaagctagtttgttatcaactaac |
5187630 |
T |
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| Q |
220 |
ttttcatacgactctatatatgccatgtatcaatgctgctaatcaatgagaatcacttttaccctacatcttctaacctttttctttcccctctcatatt |
319 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5187629 |
ttttcatacgactctatatatgccatgtatcaatgtagttaatcaatgagaatcagttttaccctacatcttctaaccttttcctttcccctctcatatt |
5187530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 198 - 321
Target Start/End: Original strand, 4847911 - 4848034
Alignment:
| Q |
198 |
agctagtttgttatcaactaacttttcatacgactctatatatgccatgtatcaatgctgctaatcaatgagaatcacttttaccctacatcttctaacc |
297 |
Q |
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| T |
4847911 |
agctagtttgttatcaactaacttttcatacgactctatatatgccatgtatcaatgctgctaatcaatgagaatcacttttaccctacatcttctaact |
4848010 |
T |
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| Q |
298 |
tttttctttcccctctcatattca |
321 |
Q |
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| T |
4848011 |
ttttcctttcccctctcatattca |
4848034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 4847446 - 4847505
Alignment:
| Q |
54 |
acattaatcaactagcagacatcaagactaaacctttgaagctagaagtatttttcaaac |
113 |
Q |
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| T |
4847446 |
acattaatcaactagcagacatcaagactaaacctttgaagttagaagtattcttcaaac |
4847505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 204
Target Start/End: Original strand, 4847607 - 4847688
Alignment:
| Q |
119 |
gagtgattgttaggtatataacattgttttattctcattagtctgttagttagttatggacttagttgtttagcaagtaagctagt |
204 |
Q |
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||||||||||||| |||| || |||||||||||||||||| || |||||||||||| ||| |||||| |||||||||||||| |
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| T |
4847607 |
gagtgattgttagatataaaaacttgttttattctcattagact----gttagttatggagttacttgttttgcaagtaagctagt |
4847688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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