View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_high_56 (Length: 301)
Name: NF19266_high_56
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_56 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 94 - 282
Target Start/End: Original strand, 8525319 - 8525496
Alignment:
| Q |
94 |
ccacaccattatgaataaatgattttgtggaaagtgttaccaaatggtttatgtgaatgaagatcaattgaaaagtaagtgtggatgaaattttaaggaa |
193 |
Q |
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| T |
8525319 |
ccacaccattatgaatatatgattttgtggaaagtgttaccaaatggtttatgtgaatgaa-----------aactaagtgtggatgatattttaaggaa |
8525407 |
T |
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| Q |
194 |
cgcaacatctatatttatatccaaattggaaatacaatattttcagaaacaatatttagtgattgtttttccttggtggaccaacacat |
282 |
Q |
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| T |
8525408 |
cacaacgtctatatttatatccaaattgaaaatacaatattttcaaaaacaatatttagtgattgtttttccttggtggaccaacacat |
8525496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 25520752 - 25520646
Alignment:
| Q |
115 |
attttgtggaaagtgttaccaaatggtttatgtgaatgaagatcaattgaaaagtaagtgtggatgaaattttaaggaacgcaacatctatatttatatc |
214 |
Q |
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| T |
25520752 |
attttttggaaagtgttactaaatggtttatgtgaatgaaaaacaatagaaaagtaagtgtggatgaaatgccaagggacacaacgtaaatatttatagc |
25520653 |
T |
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| Q |
215 |
caaattg |
221 |
Q |
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| T |
25520652 |
caaattg |
25520646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 42125916 - 42125982
Alignment:
| Q |
163 |
gaaaagtaagtgtggatgaaattttaaggaacgcaacatctatatttatatccaaattggaaataca |
229 |
Q |
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| T |
42125916 |
gaaaagtaagtgtggatgaaatggtaagaaacacaacctaaatatttatagccaaattgaaaataca |
42125982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 184
Target Start/End: Original strand, 12250641 - 12250710
Alignment:
| Q |
111 |
aatgattttgtggaaagtgttaccaaatggtttatgtgaatgaagatcaattgaaaagtaagtgtggatgaaat |
184 |
Q |
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| T |
12250641 |
aatgattttgtggaaagtgt----aaatggtttaactgaaagaaaaccaatagaaaagcaagtgtggatgaaat |
12250710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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