View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19266_high_58 (Length: 299)
Name: NF19266_high_58
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_58 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 5 - 299
Target Start/End: Complemental strand, 739282 - 738994
Alignment:
| Q |
5 |
gagtgagaagaagagtctcattagtacacacctcaagaggaagttttgctaatttccttgctnnnnnnnnnnnnntcatgggatttgtagagagatctgt |
104 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
739282 |
gagtgaaaagaagagtctcattagtacacacctcaagaggaagttttgctaatttccttgctgagagagag----tcatgggatttgtagagagatctgt |
739187 |
T |
|
| Q |
105 |
agttttcttgatggttatgatggtagctatcaaggtttcaaatgcagctgttcacaaggttggagactcttctggctggacaatcattggtagtatagat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
739186 |
agttttcttgatggttatgatggtagctatcaaggtttcaaatgcagctgttcacaaggttggagactcttctggctggacaatcattggtagtatagat |
739087 |
T |
|
| Q |
205 |
tacaagaaatgggctgctactaagaacttccaaatcggcgacactatcagtaagttcccctcactccaaatatatctgttttaaattgcggtaaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
739086 |
tacaagaaatgggctgctactaagaacttccaaatcggcgacactatcggtaagttcccctcactccaa--atatctgttttaaattgcggtaaa |
738994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 121 - 259
Target Start/End: Original strand, 47218784 - 47218922
Alignment:
| Q |
121 |
atgatggtagctatcaaggtttcaaatgcagctgttcacaaggttggagactcttctggctggacaatcattggtagtatagattacaagaaatgggctg |
220 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||| |||||||||| || ||| |||||||||| | |||||| || || ||||| |||||||||| |
|
|
| T |
47218784 |
atgatggtagctatgcagatttcatatgcagctgtatacaaggttggtgattctgctggctggactacacttggtaacattgactacaaaaaatgggctg |
47218883 |
T |
|
| Q |
221 |
ctactaagaacttccaaatcggcgacactatcagtaagt |
259 |
Q |
| |
|
|||| |||||||||||| | || |||||||| ||||||| |
|
|
| T |
47218884 |
ctaccaagaacttccaacttggtgacactattagtaagt |
47218922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University