View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19266_high_59 (Length: 297)

Name: NF19266_high_59
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19266_high_59
NF19266_high_59
[»] chr8 (7 HSPs)
chr8 (134-280)||(6808620-6808764)
chr8 (73-134)||(23564101-23564162)
chr8 (73-133)||(23566123-23566182)
chr8 (73-135)||(23565892-23565956)
chr8 (73-135)||(43888951-43889012)
chr8 (73-134)||(29346322-29346383)
chr8 (73-135)||(11960879-11960940)
[»] chr4 (9 HSPs)
chr4 (73-140)||(9884948-9885014)
chr4 (73-135)||(23981120-23981182)
chr4 (87-135)||(52439577-52439624)
chr4 (82-141)||(23981357-23981415)
chr4 (73-135)||(35904614-35904676)
chr4 (74-137)||(40450490-40450552)
chr4 (73-134)||(12144775-12144837)
chr4 (73-134)||(15782261-15782324)
chr4 (73-135)||(46360889-46360952)
[»] chr1 (5 HSPs)
chr1 (73-136)||(24004747-24004810)
chr1 (73-130)||(26486537-26486594)
chr1 (72-133)||(50879822-50879885)
chr1 (73-135)||(26399513-26399576)
chr1 (73-133)||(46583826-46583888)
[»] chr3 (11 HSPs)
chr3 (73-135)||(1421429-1421490)
chr3 (73-135)||(29853405-29853467)
chr3 (73-135)||(55090240-55090302)
chr3 (73-133)||(40066706-40066766)
chr3 (73-135)||(53523390-53523454)
chr3 (73-140)||(31341219-31341286)
chr3 (73-134)||(21549749-21549810)
chr3 (73-130)||(17543961-17544018)
chr3 (73-135)||(30908583-30908646)
chr3 (73-134)||(35359639-35359699)
chr3 (83-134)||(31341448-31341499)
[»] chr2 (9 HSPs)
chr2 (78-140)||(26756637-26756699)
chr2 (73-135)||(34545687-34545750)
chr2 (73-135)||(30728920-30728980)
chr2 (73-134)||(13691971-13692033)
chr2 (85-132)||(24413611-24413657)
chr2 (73-135)||(8898427-8898491)
chr2 (73-133)||(17688150-17688210)
chr2 (73-135)||(7327766-7327829)
chr2 (73-134)||(43015196-43015258)
[»] chr7 (5 HSPs)
chr7 (73-132)||(25622137-25622195)
chr7 (73-139)||(5835725-5835790)
chr7 (73-134)||(35097761-35097821)
chr7 (72-130)||(5077506-5077565)
chr7 (73-140)||(28000114-28000182)
[»] chr5 (5 HSPs)
chr5 (73-134)||(38861095-38861155)
chr5 (73-133)||(13012622-13012681)
chr5 (73-134)||(5661871-5661932)
chr5 (72-134)||(31261211-31261271)
chr5 (73-133)||(24801778-24801837)
[»] scaffold0025 (1 HSPs)
scaffold0025 (73-133)||(2756-2817)
[»] chr6 (5 HSPs)
chr6 (73-135)||(2181543-2181605)
chr6 (73-133)||(10790329-10790390)
chr6 (83-136)||(19376063-19376115)
chr6 (73-132)||(19418176-19418236)
chr6 (73-134)||(24602429-24602492)
[»] scaffold0334 (2 HSPs)
scaffold0334 (74-135)||(4070-4131)
scaffold0334 (83-133)||(4308-4357)
[»] scaffold0013 (1 HSPs)
scaffold0013 (73-134)||(149484-149547)


Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 134 - 280
Target Start/End: Original strand, 6808620 - 6808764
Alignment:
Q  134 ttcttttatctataccatatatataacgaaaataatatctttttgcttcttttggacttaagttttttctctttctcaaattaccctcaagatttacaca 233  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||  ||||||||||||||||||||||| ||||||||| ||||    
T  6808620 ttcttttatctataccatatatataacgaaaataatatcgtttcgcttcttttggactta--ttttttctctttctcaaattaccttcaagatttgcaca 6808717  T
Q  234 ggtcttatttatttaggacatgtacacagaggcatagctattactgt 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  6808718 ggtcttatttatttaggacatgtacacagaggcatagctattactgt 6808764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 23564162 - 23564101
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttaca-gaggtaaagcaccattaaccct 134  Q
    |||||||||||||||||| |||||||||| |||| ||||| | ||||||||||||||||||||    
T  23564162 atattttacaggggaaaacaaaaaatgacctata-ttacagggggtaaagcaccattaaccct 23564101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 23566123 - 23566182
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttacagaggtaaagcaccattaaccc 133  Q
    ||||||||| | |||||| |||||||||| |||||| |||| |||||||||||||||||||    
T  23566123 atattttacggcggaaaacaaaaaatgacctatatt-acaggggtaaagcaccattaaccc 23566182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 23565956 - 23565892
Alignment:
Q  73 atattttacagggg--aaaagaaaaaatgacttatatttacagagg-taaagcaccattaaccctt 135  Q
    ||||||||||||||  |||| |||||||||| |||||| ||||||| |||||||||||||||||||    
T  23565956 atattttacaggggggaaaacaaaaaatgacctatatt-acagagggtaaagcaccattaaccctt 23565892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 43889012 - 43888951
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttacagaggtaaagcaccattaaccctt 135  Q
    ||||||||||| | |||| |||||||||| |||||| ||||  ||||||||||||||||||||    
T  43889012 atattttacagagaaaaataaaaaatgacctatatt-acaggagtaaagcaccattaaccctt 43888951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 29346322 - 29346383
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttacagaggtaaagcaccattaaccct 134  Q
    |||||||| | ||||||| |||||||||| ||||||  | |||||||||||||| |||||||    
T  29346322 atattttatacgggaaaacaaaaaatgacctatattaccggaggtaaagcaccactaaccct 29346383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 11960940 - 11960879
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttaca-gaggtaaagcaccattaaccctt 135  Q
    ||||||||||||| |||| ||||||||||   |||||||| |||||||| ||||||||||||||    
T  11960940 atattttacagggaaaaacaaaaaatgac--ctatttacaggaggtaaatcaccattaaccctt 11960879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 9885014 - 9884948
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttacagaggtaaagcaccattaacccttctttt 140  Q
    |||||||||||||||||| |||||||||| |||| |||||| |||||| |||||||||||||| ||||    
T  9885014 atattttacaggggaaaacaaaaaatgacctata-ttacaggggtaaaacaccattaacccttttttt 9884948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 23981182 - 23981120
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttaca-gaggtaaagcaccattaaccctt 135  Q
    |||||||||||||||||| |||||||||| |||| ||||| |||||||| ||||||||||||||    
T  23981182 atattttacaggggaaaacaaaaaatgacctata-ttacatgaggtaaaacaccattaaccctt 23981120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 52439577 - 52439624
Alignment:
Q  87 aaaagaaaaaatgacttatatttacagaggtaaagcaccattaaccctt 135  Q
    |||| |||||||||| |||||| ||||||||||||||||||||||||||    
T  52439577 aaaataaaaaatgacatatatt-acagaggtaaagcaccattaaccctt 52439624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 23981357 - 23981415
Alignment:
Q  82 aggggaaaagaaaaaatgacttatatttacagaggtaaagcaccattaacccttctttta 141  Q
    |||||||||  ||||||||| |||||| |||| ||||||||||||||||||||| |||||    
T  23981357 aggggaaaaccaaaaatgacctatatt-acaggggtaaagcaccattaacccttatttta 23981415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 35904676 - 35904614
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttaca-gaggtaaagcaccattaaccctt 135  Q
    ||||||||||| |||||| ||||||| ||||||| ||||| | |||||||||||||||||||||    
T  35904676 atattttacagaggaaaacaaaaaataacttata-ttacagggggtaaagcaccattaaccctt 35904614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 40450490 - 40450552
Alignment:
Q  74 tattttacaggggaaaagaaaaaatgacttatatttacagaggtaaagcaccattaacccttct 137  Q
    ||||||||||||||||| |||||||||| |||| |||||||||| || |  |||||||||||||    
T  40450490 tattttacaggggaaaacaaaaaatgacctata-ttacagaggttaaacctcattaacccttct 40450552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 12144775 - 12144837
Alignment:
Q  73 atattttacagggg--aaaagaaaaaatgacttatatttacagaggtaaagcaccattaaccct 134  Q
    |||||||||||| |  |||| |||||||||| |||||| |||| ||||||||||||||||||||    
T  12144775 atattttacaggaggaaaaacaaaaaatgacctatatt-acaggggtaaagcaccattaaccct 12144837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 15782324 - 15782261
Alignment:
Q  73 atattttacagggg--aaaagaaaaaatgacttatatttacagaggtaaagcaccattaaccct 134  Q
    ||||||||||||||  |||| |||||||||| ||||||   || ||||||||||||||||||||    
T  15782324 atattttacaggggggaaaacaaaaaatgacctatattacaaggggtaaagcaccattaaccct 15782261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 46360889 - 46360952
Alignment:
Q  73 atattttacagggg-aaaagaaaaaatgacttatatttacagagg-taaagcaccattaaccctt 135  Q
    |||||||||||||| |||| |||||||||| |||||| |||| || |||||||||||||||||||    
T  46360889 atattttacagggggaaaacaaaaaatgacctatatt-acagggggtaaagcaccattaaccctt 46360952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 24004747 - 24004810
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttacagaggtaaagcaccattaacccttc 136  Q
    |||||||||||||||||| |||||||||| ||||||   || ||||||||||||||||||||||    
T  24004747 atattttacaggggaaaacaaaaaatgacctatattacaaggggtaaagcaccattaacccttc 24004810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 26486594 - 26486537
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttacagaggtaaagcaccattaa 130  Q
    |||||||||||||||||| |||||||||| ||||||   || |||||||||| |||||    
T  26486594 atattttacaggggaaaacaaaaaatgacctatattacaaggggtaaagcactattaa 26486537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 50879885 - 50879822
Alignment:
Q  72 tatattttacaggggaaaag-aaaaaatgacttatatttacagagg--taaagcaccattaaccc 133  Q
    |||||||||||||||||||  |||||||||| |||||| |||||||  |||||||||||||||||    
T  50879885 tatattttacaggggaaaaataaaaaatgacctatatt-acagaggggtaaagcaccattaaccc 50879822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 26399513 - 26399576
Alignment:
Q  73 atattttacaggg-gaaaagaaaaaatgacttatatttacag-aggtaaagcaccattaaccctt 135  Q
    ||||||||||||| ||||| ||||||| || |||||| |||| ||||||||||||||||||||||    
T  26399513 atattttacagggagaaaacaaaaaataacctatatt-acaggaggtaaagcaccattaaccctt 26399576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 46583888 - 46583826
Alignment:
Q  73 atattttacaggggaaaaga--aaaaatgacttatatttacagagg-taaagcaccattaaccc 133  Q
    |||||||||||||||||| |  ||||||||| |||||| ||||||| |||||||||||||||||    
T  46583888 atattttacaggggaaaaaacaaaaaatgacctatatt-acagagggtaaagcaccattaaccc 46583826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 1421490 - 1421429
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttacagaggtaaagcaccattaaccctt 135  Q
    ||||||||||||| |||| |||||||||| |||||| |||| |||||||||||||||||||||    
T  1421490 atattttacagggaaaaacaaaaaatgacatatatt-acaggggtaaagcaccattaaccctt 1421429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 29853467 - 29853405
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttaca-gaggtaaagcaccattaaccctt 135  Q
    ||||||| |||||||||| ||||||||||||||| ||||| | |||||||||||||||||||||    
T  29853467 atattttccaggggaaaataaaaaatgacttata-ttacagggggtaaagcaccattaaccctt 29853405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 55090240 - 55090302
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttaca-gaggtaaagcaccattaaccctt 135  Q
    |||||||||||||||||| |||||||||| |||| ||||| | |||||||||||||||||||||    
T  55090240 atattttacaggggaaaacaaaaaatgacctata-ttacagggggtaaagcaccattaaccctt 55090302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 40066766 - 40066706
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttaca-gaggtaaagcaccattaaccc 133  Q
    |||||||||||||||||| |||||||||| |||| ||||| | |||||||||||||||||||    
T  40066766 atattttacaggggaaaacaaaaaatgacctata-ttacagggggtaaagcaccattaaccc 40066706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 53523454 - 53523390
Alignment:
Q  73 atattttacagggg--aaaagaaaaaatgacttatatttacagaggtaaagcaccattaaccctt 135  Q
    ||||||||||||||  |||| |||||||||| ||||||   ||||||||||||||||||||||||    
T  53523454 atattttacaggggggaaaacaaaaaatgacctatattacaagaggtaaagcaccattaaccctt 53523390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 31341286 - 31341219
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttacagagg-taaagcaccattaacccttctttt 140  Q
    |||||||||||||| ||| |||||||||| |||| |||||| || ||||||||||||||||||| ||||    
T  31341286 atattttacagggggaaacaaaaaatgacctata-ttacaggggataaagcaccattaacccttgtttt 31341219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 21549810 - 21549749
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttacagagg-taaagcaccattaaccct 134  Q
    ||||||||||||||||||  ||||||| | |||||| ||||||| ||||||||||||||||||    
T  21549810 atattttacaggggaaaaccaaaaatggcctatatt-acagagggtaaagcaccattaaccct 21549749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 17543961 - 17544018
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttacagaggtaaagcaccattaa 130  Q
    |||||||||||||||||| ||||||| || ||||||   || ||||||||||||||||    
T  17543961 atattttacaggggaaaacaaaaaataacctatattacaaggggtaaagcaccattaa 17544018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 30908646 - 30908583
Alignment:
Q  73 atattttacagggg--aaaagaaaaaatgacttatatttacagaggtaaagcaccattaaccctt 135  Q
    |||||||||||| |  |||| |||||||||| |||||| |||| |||||||||||||||||||||    
T  30908646 atattttacaggaggaaaaataaaaaatgacatatatt-acaggggtaaagcaccattaaccctt 30908583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 35359639 - 35359699
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttacagaggtaaagcaccattaaccct 134  Q
    ||||||||||||| ||||  ||||||||| |||| |||||| |||||| |||||||||||||    
T  35359639 atattttacagggaaaaaccaaaaatgacctata-ttacaggggtaaaacaccattaaccct 35359699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 31341448 - 31341499
Alignment:
Q  83 ggggaaaagaaaaaatgacttatatttacag-aggtaaagcaccattaaccct 134  Q
    |||||||| |||||||||| |||||| |||| |||||||||||||||||||||    
T  31341448 ggggaaaacaaaaaatgacctatatt-acaggaggtaaagcaccattaaccct 31341499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 26756637 - 26756699
Alignment:
Q  78 ttacaggggaaaagaaaaaatgacttatatttacagaggtaaagcaccattaacccttctttt 140  Q
    ||||||||||||| ||||||| |||||||||   |||||||||||||||||||||||| ||||    
T  26756637 ttacaggggaaaacaaaaaattacttatattacaagaggtaaagcaccattaacccttttttt 26756699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 34545750 - 34545687
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttacaga--ggtaaagcaccattaaccctt 135  Q
    ||||||||||||||||||  |||||||||||||| |||||||  |||||||||||||||||||||    
T  34545750 atattttacaggggaaaaccaaaaatgacttata-ttacagaggggtaaagcaccattaaccctt 34545687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 30728920 - 30728980
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttacagaggtaaagcaccattaaccctt 135  Q
    ||||||||| ||||||||  |||||||||||||| |||||| |||||||||||||||||||||    
T  30728920 atattttacgggggaaaaccaaaaatgacttata-ttacag-ggtaaagcaccattaaccctt 30728980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 13691971 - 13692033
Alignment:
Q  73 atattttacagg-ggaaaagaaaaaatgacttatatttaca-gaggtaaagcaccattaaccct 134  Q
    |||||||||||| |||||| ||||||||||||||| ||||| | ||||||||||||||||||||    
T  13691971 atattttacaggaggaaaacaaaaaatgacttata-ttacagggggtaaagcaccattaaccct 13692033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 132
Target Start/End: Complemental strand, 24413657 - 24413611
Alignment:
Q  85 ggaaaagaaaaaatgacttatatttacagaggtaaagcaccattaacc 132  Q
    |||||| |||||||||| |||||| |||||||||||||||||||||||    
T  24413657 ggaaaacaaaaaatgacctatatt-acagaggtaaagcaccattaacc 24413611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 8898427 - 8898491
Alignment:
Q  73 atattttacagg--ggaaaagaaaaaatgacttatatttacagaggtaaagcaccattaaccctt 135  Q
    ||||||||||||  |||||| |||||||||| ||||||    |||||||||||||||||||||||    
T  8898427 atattttacaggagggaaaacaaaaaatgacctatattataggaggtaaagcaccattaaccctt 8898491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 17688150 - 17688210
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttaca-gaggtaaagcaccattaaccc 133  Q
    |||||||||||||||||| |||||||||| |||| ||||| | |||||| ||||||||||||    
T  17688150 atattttacaggggaaaacaaaaaatgacctata-ttacagggggtaaaacaccattaaccc 17688210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 7327829 - 7327766
Alignment:
Q  73 atattttacagggg-aaaagaaaaaatgacttatatttacagagg-taaagcaccattaaccctt 135  Q
    |||||||||||||| |||| |||||||||| |||||| |||| || |||||||||||||||||||    
T  7327829 atattttacagggggaaaacaaaaaatgacctatatt-acagggggtaaagcaccattaaccctt 7327766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 43015196 - 43015258
Alignment:
Q  73 atattttacaggggaaaaga--aaaaatgacttatatttacagaggtaaagcaccattaaccct 134  Q
    ||||||||||||||| || |  ||||||||| |||||| |||| ||||||||||||||||||||    
T  43015196 atattttacaggggacaaaaccaaaaatgacctatatt-acaggggtaaagcaccattaaccct 43015258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 25622195 - 25622137
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttacagaggtaaagcaccattaacc 132  Q
    ||||||||||||||||||  ||||||||| |||| |||||| ||||||||||||||||||    
T  25622195 atattttacaggggaaaaccaaaaatgacctata-ttacaggggtaaagcaccattaacc 25622137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 5835790 - 5835725
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttacagaggtaaagcaccattaacccttcttt 139  Q
    |||||||||||||||||| |||||||||| |||| ||||||  ||||| ||||||||||||| ||||    
T  5835790 atattttacaggggaaaataaaaaatgacctata-ttacaggagtaaaacaccattaaccctacttt 5835725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 35097761 - 35097821
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttacagaggtaaagcaccattaaccct 134  Q
    |||||||||||||| ||| |||||||||| |||| |||||| |||||| |||||||||||||    
T  35097761 atattttacagggggaaacaaaaaatgacctata-ttacaggggtaaaacaccattaaccct 35097821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 5077506 - 5077565
Alignment:
Q  72 tatattttacagg--ggaaaagaaaaaatgacttatatttacagaggtaaagcaccattaa 130  Q
    |||||||||||||  |||||| |||||||||| |||||| || ||||||||||||||||||    
T  5077506 tatattttacaggagggaaaacaaaaaatgacctatatt-acggaggtaaagcaccattaa 5077565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 28000114 - 28000182
Alignment:
Q  73 atattttacagggg-aaaagaaaaaatgacttatatttacagagg-taaagcaccattaacccttctttt 140  Q
    |||||||||||||| |||| |||||||||| |||||| |||| || ||||||||||||||||||| ||||    
T  28000114 atattttacagggggaaaacaaaaaatgacctatatt-acagggggtaaagcaccattaacccttttttt 28000182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 38861155 - 38861095
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttacagaggtaaagcaccattaaccct 134  Q
    |||||||||||| ||||| ||||||| ||||||| |||||| |||||| |||||||||||||    
T  38861155 atattttacaggagaaaacaaaaaataacttata-ttacaggggtaaaacaccattaaccct 38861095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 13012622 - 13012681
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttacagaggtaaagcaccattaaccc 133  Q
    ||||||||||||||||||   |||||||| |||||| |||| |||||||||||||||||||    
T  13012622 atattttacaggggaaaaaccaaaatgacctatatt-acaggggtaaagcaccattaaccc 13012681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 5661871 - 5661932
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttaca-gaggtaaagcaccattaaccct 134  Q
    |||||||||||||||||| |||||||||  |||| ||||| | ||||||||||||||||||||    
T  5661871 atattttacaggggaaaacaaaaaatgatctata-ttacagggggtaaagcaccattaaccct 5661932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 31261211 - 31261271
Alignment:
Q  72 tatattttacaggggaaaagaaaaaatgacttatatttacagaggtaaagcaccattaaccct 134  Q
    |||||||||||| |||||| |||||||||| |||| |||||| | ||||||||||||||||||    
T  31261211 tatattttacagaggaaaacaaaaaatgacctata-ttacag-gataaagcaccattaaccct 31261271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 24801837 - 24801778
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttacagaggtaaagcaccattaaccc 133  Q
    ||||||||||||| |||| |||||||||| |||| |||||  | |||||||||||||||||    
T  24801837 atattttacagggaaaaacaaaaaatgacctata-ttacaaggataaagcaccattaaccc 24801778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 2817 - 2756
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatttaca--gaggtaaagcaccattaaccc 133  Q
    |||||||||||||||||| |||||||||| |||| |||||  | |||||||||||||||||||    
T  2817 atattttacaggggaaaataaaaaatgacctata-ttacaggggggtaaagcaccattaaccc 2756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 2181543 - 2181605
Alignment:
Q  73 atattttacagggg-aaaagaaaaaatgacttatatttacagaggtaaagcaccattaaccctt 135  Q
    |||||||||||||| |||| ||||||| || |||||| |||| |||||||||||||||||||||    
T  2181543 atattttacagggggaaaacaaaaaataacctatatt-acaggggtaaagcaccattaaccctt 2181605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 10790329 - 10790390
Alignment:
Q  73 atattttacagggga--aaagaaaaaatgacttatatttacagaggtaaagcaccattaaccc 133  Q
    |||||||||||||||  ||| |||||||||| |||||| |||| |||||||||||||||||||    
T  10790329 atattttacaggggagaaaataaaaaatgacctatatt-acaggggtaaagcaccattaaccc 10790390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 19376115 - 19376063
Alignment:
Q  83 ggggaaaagaaaaaatgacttatatttacagaggtaaagcaccattaacccttc 136  Q
    ||||||||  ||||||||| |||||| |||| ||||||||||||||||||||||    
T  19376115 ggggaaaaccaaaaatgacctatatt-acaggggtaaagcaccattaacccttc 19376063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 19418176 - 19418236
Alignment:
Q  73 atattttacaggggaaaagaaaaaatgacttatatt-tacagaggtaaagcaccattaacc 132  Q
    ||||||||||||||||||  ||||||||| |||||| || || |||||| |||||||||||    
T  19418176 atattttacaggggaaaactaaaaatgacctatattatagaggggtaaaacaccattaacc 19418236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 24602492 - 24602429
Alignment:
Q  73 atattttacagggg--aaaagaaaaaatgacttatatttacagaggtaaagcaccattaaccct 134  Q
    ||||||||||||||  |||| |||||||||| ||||||   || ||||||||||||||||||||    
T  24602492 atattttacaggggggaaaacaaaaaatgacctatattacaaggggtaaagcaccattaaccct 24602429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 4131 - 4070
Alignment:
Q  74 tattttacagg-ggaaaagaaaaaatgacttatatttacagaggtaaagcaccattaaccctt 135  Q
    ||||||||||| ||||||  |||||||||||||||| |||| |||||| ||||||||||||||    
T  4131 tattttacaggaggaaaaccaaaaatgacttatatt-acaggggtaaatcaccattaaccctt 4070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 4308 - 4357
Alignment:
Q  83 ggggaaaagaaaaaatgacttatatttacagaggtaaagcaccattaaccc 133  Q
    |||||||| |||||||||| |||||| |||| |||||||||||||||||||    
T  4308 ggggaaaacaaaaaatgacctatatt-acaggggtaaagcaccattaaccc 4357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 149547 - 149484
Alignment:
Q  73 atattttacagggg--aaaagaaaaaatgacttatatttacagaggtaaagcaccattaaccct 134  Q
    ||||||||||||||  |||| |||||||||| |||||||   | ||||||||||||||||||||    
T  149547 atattttacaggggggaaaacaaaaaatgacctatatttcagggggtaaagcaccattaaccct 149484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University