View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_high_6 (Length: 584)
Name: NF19266_high_6
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_6 |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 17 - 574
Target Start/End: Original strand, 44314291 - 44314848
Alignment:
| Q |
17 |
aggagatgatgacattattgctgcagtcattgctgaagcaaacattgtgactgatgtgaacaaatgggtggtagactctggagctacccgacatatatgt |
116 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44314291 |
aggagatgatgacattattgctgcagttattgctgaagcaaacattgtgactgatgtgaacaaatgggtggtagactctggagctacccgacatatatgt |
44314390 |
T |
|
| Q |
117 |
gctactaaggatgccttcacctcctacaatactgtgggggatggagaagaactggtttaccttggtgactctcaaactgctgctgtttcgggaaaaggga |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44314391 |
gctactaaggatgccttcacctcctacaatactgtgggggatggagaagaactggtttaccttggtgactctcgaactgctgctgtttcgggaaaaggga |
44314490 |
T |
|
| Q |
217 |
aagttatgttgaagctcacatcaggaaagaccttggctctaagtgatgtcttacatgtgcctaatataaggaccaatctgatttcagtggctcttttgag |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44314491 |
aagttatgttgaagctcacatcaggaaagaccttggctctaagtgatgtcttacatgtgcctaatataaggaccaatctggtttcagtggctcttttgag |
44314590 |
T |
|
| Q |
317 |
caagggtgggattaaagtgtcatttgaatctgacaagattgtaatgacaaaagataatgtatttgtggggaaaggttattgtgacaagggtctgtttgta |
416 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44314591 |
caagggtgggattaaagtgtcatttgaatctgacaagattgtaatgacaaaagataatgtatttgtggggaaaggttattgtgacaagggtctgtttgta |
44314690 |
T |
|
| Q |
417 |
cttaacattgctgaagttatgcataattaggttccttctttagagggatcagattttcgtttgctttttagtatggcacctagaataaacattgctgaaa |
516 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44314691 |
ctaaacattgctgaagttatgcataattaggttccttctttagagggatcagattttcttttgcttattagtatggcacctagaataaacattgctgaaa |
44314790 |
T |
|
| Q |
517 |
agctttggttcagtcatgtcatttcattctgttaaattgaattcagttgctttctgtg |
574 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44314791 |
agctttggttcagtcatgtcatttcattttgttaaattgaattcagttgctttctgtg |
44314848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 17 - 574
Target Start/End: Complemental strand, 34098601 - 34098044
Alignment:
| Q |
17 |
aggagatgatgacattattgctgcagtcattgctgaagcaaacattgtgactgatgtgaacaaatgggtggtagactctggagctacccgacatatatgt |
116 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34098601 |
aggagatgatgacattattgctgcagttattgctgaagcaaacattgtgactgatgtgaacaaatgggtggtagactctggagctacccgacatatatgt |
34098502 |
T |
|
| Q |
117 |
gctactaaggatgccttcacctcctacaatactgtgggggatggagaagaactggtttaccttggtgactctcaaactgctgctgtttcgggaaaaggga |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
34098501 |
gctactaaggatgccttcacctcctacaatactgtgggggatggagaagaactggtttaccttggtgactctcgaactgctgctgtttcgggaaaaggga |
34098402 |
T |
|
| Q |
217 |
aagttatgttgaagctcacatcaggaaagaccttggctctaagtgatgtcttacatgtgcctaatataaggaccaatctgatttcagtggctcttttgag |
316 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34098401 |
aagttatgttgaagctcacatcaggaaagaccttggctctaagtgatgtcttacatgtgcctaatataaggaccaatctggtttcagtggctcttttgag |
34098302 |
T |
|
| Q |
317 |
caagggtgggattaaagtgtcatttgaatctgacaagattgtaatgacaaaagataatgtatttgtggggaaaggttattgtgacaagggtctgtttgta |
416 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34098301 |
caagggtgggattaaagtgtcatttgaatctgacaagattgtaatgacaaaagataatgtatttgtggggaaaggttattgtgacaagggtctgtttgta |
34098202 |
T |
|
| Q |
417 |
cttaacattgctgaagttatgcataattaggttccttctttagagggatcagattttcgtttgctttttagtatggcacctagaataaacattgctgaaa |
516 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34098201 |
ctaaacattgctgaagttatgcataattaggttccttctttagagggatcagattttcttttgcttattagtatggcacctagaataaacattgctgaaa |
34098102 |
T |
|
| Q |
517 |
agctttggttcagtcatgtcatttcattctgttaaattgaattcagttgctttctgtg |
574 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34098101 |
agctttggttcagtcatgtcatttcattttgttaaattgaattcagttgctttctgtg |
34098044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 17 - 559
Target Start/End: Complemental strand, 40281 - 39739
Alignment:
| Q |
17 |
aggagatgatgacattattgctgcagtcattgctgaagcaaacattgtgactgatgtgaacaaatgggtggtagactctggagctacccgacatatatgt |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40281 |
aggagatgataacattattgctgcagtcattgctgaagcaaatattgtgactgatgtgaacaaatgggtggtagactctggagctacccgacatatatgt |
40182 |
T |
|
| Q |
117 |
gctactaaggatgccttcacctcctacaatactgtgggggatggagaagaactggtttaccttggtgactctcaaactgctgctgtttcgggaaaaggga |
216 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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|
| T |
40181 |
gctactaaggatgccttcacctcctacaatattgtgggggatggagaagaactggtttaccttggtgactctcgaactgctgctttttcgggaaaaggga |
40082 |
T |
|
| Q |
217 |
aagttatgttgaagctcacatcaggaaagaccttggctctaagtgatgtcttacatgtgcctaatataaggaccaatctgatttcagtggctcttttgag |
316 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
40081 |
aagttatgttgaagctcacatcagaaaagaccttggctttaagtgatgtcttacatgtgcctaatataaggaccaatctaatttcagtggctcgtttgag |
39982 |
T |
|
| Q |
317 |
caagggtgggattaaagtgtcatttgaatctgacaagattgtaatgacaaaagataatgtatttgtggggaaaggttattgtgacaagggtctgtttgta |
416 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39981 |
caagggtgggattaaagtgtcatttgagtctaacaagattgtaatgacaaaagataatgtatttgtggggaaaggttattgtgacaagggtctgtttgta |
39882 |
T |
|
| Q |
417 |
cttaacattgctgaagttatgcataattaggttccttctttagagggatcagattttcgtttgctttttagtatggcacctagaataaacattgctgaaa |
516 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| |||||||| |||||||||||||||||||||||| |
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| T |
39881 |
ctaaacattgctgaagttatgcataattaggttccttctttagagggattaggttttcttttgcttattagtatgtcacctagaataaacattgctgaaa |
39782 |
T |
|
| Q |
517 |
agctttggttcagtcatgtcatttcattctgttaaattgaatt |
559 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
39781 |
agctttggttcagtcatgtcatttcattctattaaattgaatt |
39739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 323 - 431
Target Start/End: Original strand, 19430289 - 19430397
Alignment:
| Q |
323 |
tgggattaaagtgtcatttgaatctgacaagattgtaatgacaaaagataatgtatttgtggggaaaggttattgtgacaagggtctgtttgtacttaac |
422 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||| | ||| ||||||||| ||||| |||| ||| | || || ||||||||||| |
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| T |
19430289 |
tggggttaatgtgtcatttgaatctgacaagattgtaatgacaaagaaaaataaatttgtgggaaaaggctattttgatcaaggactctttgtacttaat |
19430388 |
T |
|
| Q |
423 |
attgctgaa |
431 |
Q |
| |
|
||| ||||| |
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|
| T |
19430389 |
atttctgaa |
19430397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 41397517 - 41397476
Alignment:
| Q |
326 |
gattaaagtgtcatttgaatctgacaagattgtaatgacaaa |
367 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| |||||| |
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|
| T |
41397517 |
gattaaagtgtcatttaaatctgacaagattgtaacgacaaa |
41397476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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