View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_high_61 (Length: 295)
Name: NF19266_high_61
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_61 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 46864479 - 46864194
Alignment:
| Q |
11 |
cacagacaaaccaaggctgtaaagacacattaccattttcatgggttccaaacatggggcagcttgtccgttaggtgtgatgcaattaaa-tcaccataa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
46864479 |
cacagacaaaccaaggctgtaaagacacattaccattttcatgggttccaaacatggggcagcttgtccgttaggtgtgatgcaattaaaatcaccataa |
46864380 |
T |
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| Q |
110 |
aatggtgtgtctgagttatgtttgtgagtcacaaaccaaaccagactaccattgccattttttgcaagtatgcttagtattggcaaatcaatgtgcacca |
209 |
Q |
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| T |
46864379 |
aatggtgtgtctgagttatgtttgtgagtcacaagccaaaccagactaccattgccattttttgcaagtatgcttagtattggcaaatcaatgtgcacca |
46864280 |
T |
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| Q |
210 |
agttttaaaactatatattatttgggtgtaaatcaggtatccttcgtgcgcaactgtagagactaatttctcgaacattgtgaaac |
295 |
Q |
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| T |
46864279 |
agttttaaaactatatattatttgggtgtaaatcaggtatcctttgcgcgcaactgcagagactaatccctcgaacattgtgaaac |
46864194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 6643945 - 6643885
Alignment:
| Q |
235 |
gtgtaaatcaggtatccttcgtgcgcaactgtagagactaatttctcgaacattgtgaaac |
295 |
Q |
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| T |
6643945 |
gtgtaaatcggttatcctccgcgcgcaactgcagagattaatttctcgaatgttgtgaaac |
6643885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 10750756 - 10750704
Alignment:
| Q |
239 |
aaatcaggtatccttcgtgcgcaactgtagagactaatttctcgaacattgtg |
291 |
Q |
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| T |
10750756 |
aaatcaggtatcctctgcgcgcaactgtaaagactaatccctcgaacattgtg |
10750704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 31412282 - 31412229
Alignment:
| Q |
238 |
taaatcaggtatccttcgtgcgcaactgtagagactaatttctcgaacattgtg |
291 |
Q |
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| T |
31412282 |
taaatcggatatcctccgtgcgcaactgtggagactaatttctcgagcattgtg |
31412229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 276
Target Start/End: Original strand, 13468709 - 13468764
Alignment:
| Q |
221 |
tatatattatttgggtgtaaatcaggtatccttcgtgcgcaactgtagagactaat |
276 |
Q |
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| T |
13468709 |
tatatattttttgggtgtaaaccgggtatcctccgtgcgcaactgcggagactaat |
13468764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 39086923 - 39086859
Alignment:
| Q |
227 |
ttatttgggtgtaaatcaggtatccttcgtgcgcaactgtagagactaatttctcgaacattgtg |
291 |
Q |
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| T |
39086923 |
ttatttgggtgtaaaccaggtatcctccgcgtgcaactgcggagactaatccctcgagcattgtg |
39086859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 33529425 - 33529379
Alignment:
| Q |
230 |
tttgggtgtaaatcaggtatccttcgtgcgcaactgtagagactaat |
276 |
Q |
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| T |
33529425 |
tttgggtgtaaatcaagtatcctccgtgcgcaactgcggagactaat |
33529379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 22017632 - 22017571
Alignment:
| Q |
230 |
tttgggtgtaaatcaggtatccttcgtgcgcaactgtagagactaatttctcgaacattgtg |
291 |
Q |
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||||||| ||||||| ||||| || ||||||||||||||||| |||| ||||| ||||||| |
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| T |
22017632 |
tttgggtataaatcacgtatcttttgtgcgcaactgtagagattaatcgctcgatcattgtg |
22017571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 273
Target Start/End: Original strand, 39514277 - 39514310
Alignment:
| Q |
240 |
aatcaggtatccttcgtgcgcaactgtagagact |
273 |
Q |
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| T |
39514277 |
aatcaggtatccttcgtgcgcaactgcagagact |
39514310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 26495 - 26438
Alignment:
| Q |
234 |
ggtgtaaatcaggtatccttcgtgcgcaactgtagagactaatttctcgaacattgtg |
291 |
Q |
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| T |
26495 |
ggtgtaaaccgggtatcctccgcgcgcaactgcggagactaatctctcgaacattgtg |
26438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 11486722 - 11486778
Alignment:
| Q |
235 |
gtgtaaatcaggtatccttcgtgcgcaactgtagagactaatttctcgaacattgtg |
291 |
Q |
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| T |
11486722 |
gtgtaaaccgggtatcctccgcgcgcaactgtagagactaatctcttgagcattgtg |
11486778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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