View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_high_63 (Length: 289)
Name: NF19266_high_63
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_63 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 64 - 289
Target Start/End: Original strand, 23074663 - 23074888
Alignment:
| Q |
64 |
atttaaattggaattttaactatcatgatgattgaaggcaaacataattgcaaaatcgtaggattttactttgaagtcattgctacaaatcacacattga |
163 |
Q |
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| T |
23074663 |
atttaaattggaattttaactatcatgatgattgaaggcaaacataattgcaaaatcctaggattttactttgaagtcattgctacaaatcacacattga |
23074762 |
T |
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| Q |
164 |
ataagatcaatctttggataagtttgagtagaagacatctttcactttccaaatcaattttgtgtttgtcaacgtcccttagtaggccaagcactcgctg |
263 |
Q |
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| T |
23074763 |
ataagataaatctttggataagtttgagtagaagacatctttcactttccaaatcaattttgtgtgtgtcaacttcccttagtaggccaagcactcgctg |
23074862 |
T |
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| Q |
264 |
gtaatgaaagttcattgcctaattaa |
289 |
Q |
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| T |
23074863 |
gtaatgaaagttcattgcctaattaa |
23074888 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 32429759 - 32429705
Alignment:
| Q |
36 |
cataatcgcaaaatcataggatttaaccatttaaattggaattttaactatcatg |
90 |
Q |
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| T |
32429759 |
cataatcgcaaaatcatgggattttacaattcaaattggaattttaactaccatg |
32429705 |
T |
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