View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19266_high_66 (Length: 279)

Name: NF19266_high_66
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19266_high_66
NF19266_high_66
[»] chr6 (5 HSPs)
chr6 (1-152)||(14035327-14035478)
chr6 (196-262)||(14035522-14035588)
chr6 (51-105)||(14037143-14037197)
chr6 (2-44)||(14036556-14036598)
chr6 (116-152)||(14036824-14036860)


Alignment Details
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 14035327 - 14035478
Alignment:
Q  1 gttcattttcatttcttcgaagcaatcaacatccacaactatccaggaaacaattcaaaagaattgaacaatcatgactcaaaacataaatgggtccaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||    
T  14035327 gttcattttcatttcttcgaagcaatcaacatccacaactatccaggaaacaactcaaaagaattgaacggtcatgactcaaaacataaatgggtccaga 14035426  T
Q  101 ctaatnnnnnnnngataaagactacgcgatgacaaaataagtgttttagaag 152  Q
    |||||        | |||||||||||||||||||||||||||||||||||||    
T  14035427 ctaataaaaaaaaggtaaagactacgcgatgacaaaataagtgttttagaag 14035478  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 14035522 - 14035588
Alignment:
Q  196 gatagacttggaaaagtctctagtcaattacgcctactatggaaagactactttcatccacactttt 262  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14035522 gatagacttggaaaagtctctagtcaattacacctactatggaaagactactttcatccacactttt 14035588  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 14037143 - 14037197
Alignment:
Q  51 caattcaaaagaattgaacaatcatgactcaaaacataaatgggtccagactaat 105  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  14037143 caatccaaaagaattgaacgatcatgactcaaaacataaatgggtccaaactaat 14037197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 14036556 - 14036598
Alignment:
Q  2 ttcattttcatttcttcgaagcaatcaacatccacaactatcc 44  Q
    ||||||||||||||||| ||||||||||||||||||| |||||    
T  14036556 ttcattttcatttcttcaaagcaatcaacatccacaattatcc 14036598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 14036824 - 14036860
Alignment:
Q  116 taaagactacgcgatgacaaaataagtgttttagaag 152  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  14036824 taaagactacgagatgacaaagtaagtgttttagaag 14036860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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