View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_high_67 (Length: 277)
Name: NF19266_high_67
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_67 |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 33713510 - 33713259
Alignment:
| Q |
8 |
agattatactatgaattcgattaagggtcctagaggttcttattgttgaaatttaggcctaactcatccaaccaaaaccgacttcgtgggattgtgttag |
107 |
Q |
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| T |
33713510 |
agattgtactattaattcgattaagggtcctagaggttcttattgttgaaatttaggcctaactcatccaaccaaaaccgacttcatgggattgtgttag |
33713411 |
T |
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| Q |
108 |
gcccaaccatgacttctatgacttatgtcccctccgatctttttaatgtagatgatgcgatgattttttgcgtgggtactttatctaacttaagagagat |
207 |
Q |
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| T |
33713410 |
gcccaaccatgacttctatgacttatgtcccctccgatctttttaatgtagatgatgtgatgattttttgcgtgggtacttaatctaacttaagagagat |
33713311 |
T |
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| Q |
208 |
cttaagcaattattgattaattatgctagtgtttctggccatgtaaaaatag |
259 |
Q |
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| T |
33713310 |
cttaagcaattattgattaattatgctagtgtttctggccatgtaaaaatag |
33713259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 21214360 - 21214300
Alignment:
| Q |
181 |
gggtactttatctaacttaagagagatcttaagcaattattgattaattatgctagtgtttct |
243 |
Q |
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| T |
21214360 |
gggtactttatctaacttaagaga--tcttaagcaattatttaatgattatgcaagtgtttct |
21214300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 34 - 256
Target Start/End: Original strand, 4302 - 4526
Alignment:
| Q |
34 |
gtcctagaggttcttattgttgaaatttaggcctaactcatccaaccaaaaccgacttcgtgggattgtgttaggcccaaccatgacttctatgacttat |
133 |
Q |
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| T |
4302 |
gtcctagaggttcttattgttgaaatttaggtttaactcatccttacaaaaccgactttgtggtattgtgttagactcaatcacgatttctatgacttat |
4401 |
T |
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| Q |
134 |
gtcccctccgatctttttaatgtagatgatgcgatga-ttttttgcgtgggtactttatctaacttaagagagatcttaagcaattattgattaa----t |
228 |
Q |
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| T |
4402 |
gtcccctccgatcttttttatgcagatgatgcgatgatttttttgcgtgtgtac-ttatctaacata--agagatcttaaacaattattgaataactata |
4498 |
T |
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| Q |
229 |
tatgctagtgtttctggccatgtaaaaa |
256 |
Q |
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| T |
4499 |
tatgctagtgtttctggccgtgtaaaaa |
4526 |
T |
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