View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_high_7 (Length: 566)
Name: NF19266_high_7
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 22 - 556
Target Start/End: Original strand, 1573304 - 1573839
Alignment:
| Q |
22 |
aagcatgtgttaaaggctagtttggatgatacaagagtggatagttatgcaattgggacttattttattgaaaatgatacatggattcctgataacccac |
121 |
Q |
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| T |
1573304 |
aagcatgtgttaaaggctagtttggatgatacaagagtggatagttatgcaattgggacttattttattgaaaatgatacatggattcctgataacccac |
1573403 |
T |
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| Q |
122 |
ttgaggacgtgggtattgggttgcttttggactatggaatatactatgcttcaaagactttctatgatcaagtgnnnnnnngaaggattttgtggggatg |
221 |
Q |
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| T |
1573404 |
ttgaggatgtgggtattgggttgcttttggactatggaatatactatgcttcaaagactttctatgatcaagtgaaaaaaagaaggattttgtggggatg |
1573503 |
T |
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| Q |
222 |
gattaatgagactgatgctgaaagtgatgacttggaaaaaggttgggcatctcttcaggtatgtattatacataacatgctgaaattacatcaatttgcc |
321 |
Q |
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| T |
1573504 |
gattaatgagactgatgctgaaagtgatgacttggaaaaaggttgggcatctcttcaggtatgtattatacataacatactgaaattacatcaatttgcc |
1573603 |
T |
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| Q |
322 |
aaagctgaaatgcattgcaaaatgttggatagagcaattcataaaatcttgtacac-annnnnnncttcagacaattccaagaacagtgctttttgatca |
420 |
Q |
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| T |
1573604 |
aaagctgaaatgcattgcaaaatgtttgatagagcaattcataaaaccttgtacacaatttttttcttcagacaattccaagaacagtgctttttgatca |
1573703 |
T |
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| Q |
421 |
gaagactggaactaatttgcttcaatggccagtagaagaagtagaaagcttaagactgagtagtgatgaatatgcagaagtagttgttacacctggctct |
520 |
Q |
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| T |
1573704 |
gaagactggaactaatttgcttcaatggccagtagaagaagtagaaagcttaagactgagtagtgatgaatatgcagaagtagttgttacacctggctct |
1573803 |
T |
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| Q |
521 |
attgttccattgaacattactcaagcaacacaggtt |
556 |
Q |
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| T |
1573804 |
gttgttccattgaacattactcaagcaacacaggtt |
1573839 |
T |
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