View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_high_76 (Length: 258)
Name: NF19266_high_76
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_76 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 2447028 - 2447260
Alignment:
| Q |
1 |
agtttattgatatataacttggcataagatgactgatcaactcaagtatgatttctgctggaaagcttggactttgcttttgtcggatatatatggctca |
100 |
Q |
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| T |
2447028 |
agtttattgatatataacttggcataagatgactgatcaactcaagtatgatttatgctggaaagcttggagtttgcttttgtcggatatatatggctca |
2447127 |
T |
|
| Q |
101 |
gtttactgaatagcgggccaggtggctcgagcgaggagagtatttaaacataagttgtactttgtaaaccttaagcttgatttatagaaagctccaaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2447128 |
gtttactgaatagcgggccaggtggctcgagcgaggagagtatttaaacataagttgtactttgtaaaccttaagcttgattaatagaaagctccaaaga |
2447227 |
T |
|
| Q |
201 |
actgacacatgtgattacatttaattgtcattt |
233 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
2447228 |
actgacacatgtgattacatttaattgtcattt |
2447260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 233
Target Start/End: Original strand, 24764831 - 24764861
Alignment:
| Q |
203 |
tgacacatgtgattacatttaattgtcattt |
233 |
Q |
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| T |
24764831 |
tgacacatgtgattacatttaattgtcattt |
24764861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 34778390 - 34778422
Alignment:
| Q |
201 |
actgacacatgtgattacatttaattgtcattt |
233 |
Q |
| |
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| T |
34778390 |
actgacacatgtgattacacttaattgtcattt |
34778422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 24547089 - 24547037
Alignment:
| Q |
139 |
agtatttaaacataagttgtactttgtaaaccttaagcttgatttatagaaag |
191 |
Q |
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|||||||||||| |||||||||||| |||||| ||||||||||| |||||||| |
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| T |
24547089 |
agtatttaaacacaagttgtactttataaaccctaagcttgattaatagaaag |
24547037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 34372514 - 34372464
Alignment:
| Q |
139 |
agtatttaaacataagttgtactttgtaaaccttaagcttgatttatagaa |
189 |
Q |
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|||||||||| | ||||||||||||||||||| ||||||||| | |||||| |
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| T |
34372514 |
agtatttaaatacaagttgtactttgtaaaccctaagcttgaataatagaa |
34372464 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 13855076 - 13855024
Alignment:
| Q |
139 |
agtatttaaacataagttgtactttgtaaaccttaagcttgatttatagaaag |
191 |
Q |
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||||||||||||||||||||| | |||| || ||||||||||| |||||||| |
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| T |
13855076 |
agtatttaaacataagttgtaatctgtatgccctaagcttgattaatagaaag |
13855024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 38779463 - 38779515
Alignment:
| Q |
139 |
agtatttaaacataagttgtactttgtaaaccttaagcttgatttatagaaag |
191 |
Q |
| |
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|||||||||||| |||||||||| || ||||| ||||||||| | |||||||| |
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| T |
38779463 |
agtatttaaacacaagttgtactatgcaaaccctaagcttgagtaatagaaag |
38779515 |
T |
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