View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19266_high_86 (Length: 250)
Name: NF19266_high_86
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_86 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 43337476 - 43337709
Alignment:
| Q |
16 |
atgccacattgagtgatggaattggaatatattgttataaactatataatataatactatcatgttgattaaattgattaaactaaattaaaataatagt |
115 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43337476 |
atgccacattgagtgatggaattgtaatatattgctataaactatataatataatactatcatgttgattaaattgattaaactaaattaaaataatagt |
43337575 |
T |
|
| Q |
116 |
actataagcataagattaggagtgataataatgaagatgcttactgccatgggacatcaccaacaagcatcctgtctccttcattatcctcatatacaag |
215 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43337576 |
actata-gcataagattaggagtgataataatgaagatgcttactgccatgggacatcaccaacaagcatcctgtctccttcattatcctcatatacaag |
43337674 |
T |
|
| Q |
216 |
agtatactctccacttccatccaataatccagtaa |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
43337675 |
agtatactctccacttccatccaataatccagtaa |
43337709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 4570426 - 4570511
Alignment:
| Q |
149 |
aagatgcttactgccatgggacatcaccaacaagcatcctgtctccttcattatcctcatatacaagagtatactctccacttcca |
234 |
Q |
| |
|
||||| |||||||||| || || || || || |||||| |||||||||||||||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
4570426 |
aagatacttactgccacggcacgtcccctactagcatcttgtctccttcattatcttcataaacaagagtatattctccacttcca |
4570511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University