View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_high_87 (Length: 250)
Name: NF19266_high_87
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_87 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 30398624 - 30398877
Alignment:
| Q |
1 |
ccttgtatctatgttgttaatcaataagattcacttttacctcaca--tattaacgtactggccacaacaaaagcagaataaacaagnnnnnnnncacat |
98 |
Q |
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| T |
30398624 |
ccttgtatctatgttgttaatcaataagattcacttttacctcacacatattaacgtactggtcacaacaaaagcagaataaacaagaaaaaaaacacat |
30398723 |
T |
|
| Q |
99 |
tcagttagcaaagttctccaatcactgggatcctgatattgatttgatacagaatattgcataagcagtgcctta-----------ggatcagaggtggt |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30398724 |
tcagttagcaaagttctccaatcactgggatcctgatattgatttgatacagaatattgcataagcagtgccttaggatcagaggtggatcagaggtggt |
30398823 |
T |
|
| Q |
188 |
tatctgcattgttagaag-actctctcaaaatcttccataaacctcatcctttg |
240 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30398824 |
tatctgcattgttagaagaactctctcaaaatcttccataaacctcatcctttg |
30398877 |
T |
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