View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19266_high_9 (Length: 530)

Name: NF19266_high_9
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19266_high_9
NF19266_high_9
[»] chr3 (16 HSPs)
chr3 (310-516)||(21379446-21379652)
chr3 (276-516)||(21406086-21406326)
chr3 (23-111)||(33214615-33214703)
chr3 (34-113)||(27073095-27073174)
chr3 (23-109)||(10598810-10598896)
chr3 (34-111)||(33214443-33214520)
chr3 (23-111)||(36274301-36274389)
chr3 (30-113)||(33219070-33219153)
chr3 (34-111)||(19580497-19580574)
chr3 (34-99)||(36274131-36274196)
chr3 (34-112)||(36635425-36635503)
chr3 (50-111)||(27072913-27072974)
chr3 (129-250)||(21406623-21406746)
chr3 (49-111)||(10599000-10599062)
chr3 (46-108)||(36635241-36635302)
chr3 (34-112)||(11650999-11651077)
[»] scaffold0214 (2 HSPs)
scaffold0214 (30-112)||(11810-11892)
scaffold0214 (46-113)||(11624-11691)
[»] chr6 (8 HSPs)
chr6 (23-111)||(33022164-33022252)
chr6 (34-110)||(33022355-33022431)
chr6 (34-111)||(21389021-21389098)
chr6 (33-110)||(7789856-7789933)
chr6 (33-99)||(7789679-7789744)
chr6 (33-108)||(21389208-21389282)
chr6 (54-110)||(28472568-28472624)
chr6 (54-110)||(29859757-29859813)
[»] chr5 (29 HSPs)
chr5 (23-111)||(26534506-26534594)
chr5 (23-113)||(8323705-8323795)
chr5 (34-111)||(26534685-26534762)
chr5 (30-111)||(130254-130335)
chr5 (34-113)||(130435-130514)
chr5 (34-109)||(8323895-8323970)
chr5 (34-111)||(791592-791669)
chr5 (34-112)||(33377835-33377913)
chr5 (30-111)||(42630711-42630792)
chr5 (34-112)||(6518202-6518280)
chr5 (34-112)||(19898941-19899019)
chr5 (34-108)||(42630894-42630968)
chr5 (54-113)||(791810-791869)
chr5 (34-108)||(35454637-35454710)
chr5 (34-111)||(5146690-5146767)
chr5 (32-113)||(35454449-35454529)
chr5 (46-113)||(14388519-14388585)
chr5 (34-111)||(8489123-8489200)
chr5 (34-111)||(13823335-13823412)
chr5 (46-111)||(14069861-14069925)
chr5 (46-113)||(19897223-19897289)
chr5 (46-111)||(5146504-5146568)
chr5 (34-113)||(40881790-40881867)
chr5 (48-111)||(6518404-6518466)
chr5 (46-99)||(228729-228782)
chr5 (46-111)||(13823150-13823214)
chr5 (46-94)||(40882018-40882066)
chr5 (50-108)||(228987-229044)
chr5 (48-96)||(27319668-27319716)
[»] chr4 (14 HSPs)
chr4 (33-113)||(3102726-3102806)
chr4 (30-111)||(3102540-3102621)
chr4 (23-112)||(9231579-9231668)
chr4 (34-111)||(40534150-40534227)
chr4 (30-110)||(13690216-13690296)
chr4 (23-111)||(40533963-40534051)
chr4 (46-111)||(5121006-5121071)
chr4 (46-111)||(11147014-11147079)
chr4 (34-92)||(9231767-9231825)
chr4 (46-111)||(18381508-18381573)
chr4 (34-111)||(18936864-18936941)
chr4 (34-111)||(37177813-37177890)
chr4 (48-111)||(18936676-18936738)
chr4 (33-108)||(11147211-11147285)
[»] chr2 (21 HSPs)
chr2 (30-113)||(42028761-42028844)
chr2 (34-112)||(42028577-42028655)
chr2 (34-111)||(13280022-13280099)
chr2 (30-111)||(31860079-31860160)
chr2 (34-111)||(31860272-31860349)
chr2 (38-111)||(36059278-36059351)
chr2 (34-113)||(16115044-16115123)
chr2 (34-111)||(2059671-2059748)
chr2 (30-99)||(7317647-7317716)
chr2 (46-111)||(7317834-7317899)
chr2 (50-114)||(13279837-13279901)
chr2 (30-111)||(2059490-2059571)
chr2 (34-111)||(15332849-15332926)
chr2 (34-114)||(31470584-31470663)
chr2 (30-111)||(16115227-16115308)
chr2 (46-110)||(3671822-3671885)
chr2 (39-111)||(38085967-38086038)
chr2 (54-111)||(15330449-15330505)
chr2 (54-111)||(31470785-31470841)
chr2 (34-111)||(38086154-38086231)
chr2 (34-111)||(3672010-3672087)
[»] scaffold0135 (2 HSPs)
scaffold0135 (23-112)||(37445-37534)
scaffold0135 (34-92)||(37633-37691)
[»] chr8 (12 HSPs)
chr8 (23-112)||(37994707-37994796)
chr8 (34-111)||(37994895-37994972)
chr8 (23-111)||(44036814-44036902)
chr8 (33-112)||(2814430-2814509)
chr8 (34-111)||(41539770-41539847)
chr8 (39-111)||(41539963-41540034)
chr8 (33-111)||(2814243-2814320)
chr8 (46-112)||(14193524-14193589)
chr8 (34-111)||(397192-397269)
chr8 (33-112)||(397006-397084)
chr8 (46-97)||(14193337-14193388)
chr8 (46-95)||(25101746-25101795)
[»] chr1 (24 HSPs)
chr1 (30-107)||(19059378-19059455)
chr1 (34-112)||(10227711-10227789)
chr1 (34-113)||(26552179-26552258)
chr1 (46-111)||(10227911-10227976)
chr1 (23-109)||(26551992-26552078)
chr1 (50-113)||(48871440-48871503)
chr1 (46-111)||(23346419-23346484)
chr1 (34-112)||(50892962-50893040)
chr1 (34-99)||(19059565-19059630)
chr1 (46-111)||(28217718-28217783)
chr1 (46-111)||(48752593-48752657)
chr1 (46-111)||(48871247-48871311)
chr1 (46-111)||(50893162-50893226)
chr1 (46-113)||(42180569-42180635)
chr1 (33-99)||(23346607-23346672)
chr1 (33-111)||(28217530-28217607)
chr1 (33-113)||(4156890-4156969)
chr1 (46-110)||(39669257-39669321)
chr1 (33-111)||(7062183-7062260)
chr1 (46-112)||(41834075-41834140)
chr1 (34-110)||(50904992-50905070)
chr1 (34-80)||(7062038-7062084)
chr1 (46-112)||(41833873-41833939)
chr1 (48-110)||(50905113-50905175)
[»] chr7 (10 HSPs)
chr7 (23-112)||(19804796-19804885)
chr7 (34-112)||(7298634-7298712)
chr7 (46-112)||(40521215-40521281)
chr7 (38-111)||(19805605-19805678)
chr7 (50-111)||(7298840-7298900)
chr7 (46-111)||(40521016-40521080)
chr7 (33-112)||(16979604-16979682)
chr7 (32-111)||(28948991-28949069)
chr7 (46-108)||(46567960-46568021)
chr7 (46-85)||(46568157-46568196)
[»] scaffold0140 (1 HSPs)
scaffold0140 (46-111)||(15847-15912)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 310 - 516
Target Start/End: Complemental strand, 21379652 - 21379446
Alignment:
Q  310 ttgattaattggatatatgtatgtgttcaaataagaatgaatcgttgatcaaaatattcaaaactatgttcacttgcaaccatttggtccaaatccaatc 409  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21379652 ttgatcaattggatatatgtatttgttcaaataagaatgaatcgttgatcaaaatattcaaaactatgttcacttgcaaccatttggtccaaacccaatc 21379553  T
Q  410 ttaccaccaccaacatcataaacaacttctagtgttctttgttgcacattcccaaagatagtgatataactatcatctctattcgctgcaaatgccaaac 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  21379552 ttaccaccaccaacatcataaacaacttctagtgttctttgttgcacattcccaaagatagtaatatcactatcatctctattcgctgcaaatgccaaac 21379453  T
Q  510 aaacttg 516  Q
    |||||||    
T  21379452 aaacttg 21379446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 276 - 516
Target Start/End: Complemental strand, 21406326 - 21406086
Alignment:
Q  276 aaatacaattagtttaatgtattttccatgttgcttgattaattggatatatgtatgtgttcaaataagaatgaatcgttgatcaaaatattcaaaacta 375  Q
    ||||||||||  ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21406326 aaatacaattgttttaatgtatttttcattttgcttgattaattggatatatgtatgtgttcaaataagaatgaatcgttgatcaaaatattcaaaacta 21406227  T
Q  376 tgttcacttgcaaccatttggtccaaatccaatcttaccaccaccaacatcataaacaacttctagtgttctttgttgcacattcccaaagatagtgata 475  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||| |||    
T  21406226 tgttcacttgcaaccatttggtccaaacccaatcttaccaccaccaacatcataaacaacctctaatgttctttgttgcacatttccaaagatagtaata 21406127  T
Q  476 taactatcatctctattcgctgcaaatgccaaacaaacttg 516  Q
    | ||||||||||| ||| |  ||||| ||||||||| ||||    
T  21406126 tcactatcatctccatttggcgcaaacgccaaacaagcttg 21406086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 33214615 - 33214703
Alignment:
Q  23 ttcatgatggaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  33214615 ttcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaagaatttctc 33214703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 34 - 113
Target Start/End: Original strand, 27073095 - 27073174
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctcaa 113  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27073095 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcaa 27073174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 10598896 - 10598810
Alignment:
Q  23 ttcatgatggaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttc 109  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  10598896 ttcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaatttc 10598810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 33214520 - 33214443
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33214520 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 33214443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 36274301 - 36274389
Alignment:
Q  23 ttcatgatggaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||    
T  36274301 ttcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaagatgataggttagattcgttcctacataagaatttctc 36274389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 33219153 - 33219070
Alignment:
Q  30 tggaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctcaa 113  Q
    ||||||||||| |||   |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33219153 tggaaaaacaatgacgaatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcaa 33219070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 19580497 - 19580574
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||| | |||||||||||    
T  19580497 aaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctatacaagaatttctc 19580574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 36274196 - 36274131
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctaca 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36274196 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctaca 36274131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 36635425 - 36635503
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctca 112  Q
    ||||||| ||| |||||||||||||||||||||||||||  |||||| |||||||||||||||||| ||||||||||||    
T  36635425 aaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctca 36635503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 27072974 - 27072913
Alignment:
Q  50 atgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  27072974 atgttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 27072913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 250
Target Start/End: Complemental strand, 21406746 - 21406623
Alignment:
Q  129 atccaaaataagaacttcttgttttattcaacaaaccttaaat-acagaaacatgcttaaatttattttaaattacac-tccatgaacaattaccagcaa 226  Q
    |||||||| |||||  ||| ||||||||||||||||||| ||| ||||||||| ||||| |||| ||| ||||||||| || |||||||||| |||||||    
T  21406746 atccaaaacaagaaaatctggttttattcaacaaacctttaatgacagaaacaagcttacatttgtttcaaattacacatctatgaacaattgccagcaa 21406647  T
Q  227 cgacacatcttaaagtcatcaata 250  Q
      | ||||||||||||||||||||    
T  21406646 ttatacatcttaaagtcatcaata 21406623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 10599000 - 10599062
Alignment:
Q  49 catgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||||||||||||||||||||||||||||| |||||||||||| | ||| |||||||||||    
T  10599000 catgttttaatttgttgtttgtaaggatgatatgttaggttcgtttccacacaagaatttctc 10599062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 36635302 - 36635241
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaattt 108  Q
    |||||||||||||||||||||||||||  |||||| |||||||||||||||||| ||||||||    
T  36635302 tgtcatgttttaatttgttgtttgtaacaatgata-gttaggttcgttcctacacaagaattt 36635241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 11651077 - 11650999
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctca 112  Q
    ||||||| || || |||| |||||| |||||||||||||| |||||| ||||||||||||| || | ||||||||||||    
T  11651077 aaaacaatgatatatcatattttaaattgttgtttgtaagaatgatatgttaggttcgttcataaacaagaatttctca 11650999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 11810 - 11892
Alignment:
Q  30 tggaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctca 112  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11810 tggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctca 11892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 11691 - 11624
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctcaa 113  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  11691 tgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattactcaa 11624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 33022252 - 33022164
Alignment:
Q  23 ttcatgatggaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  33022252 ttcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaataatttctc 33022164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 33022355 - 33022431
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttct 110  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  33022355 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 33022431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 21389098 - 21389021
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||| ||| | |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  21389098 aaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacagaagaatttctc 21389021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 7789856 - 7789933
Alignment:
Q  33 aaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttct 110  Q
    |||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||| |||||||| ||||||||||    
T  7789856 aaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcattcctacacaagaatttct 7789933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 7789744 - 7789679
Alignment:
Q  33 aaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctaca 99  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  7789744 aaaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctaca 7789679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 21389208 - 21389282
Alignment:
Q  33 aaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaattt 108  Q
    ||||| || ||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||    
T  21389208 aaaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 21389282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 28472568 - 28472624
Alignment:
Q  54 tttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttct 110  Q
    ||||||||||||||| |||  ||||||  ||||||||||||||||| || |||||||    
T  28472568 tttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 28472624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 29859757 - 29859813
Alignment:
Q  54 tttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttct 110  Q
    ||||||||||||||| |||  ||||||  ||||||||||||||||| || |||||||    
T  29859757 tttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 29859813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 26534594 - 26534506
Alignment:
Q  23 ttcatgatggaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  26534594 ttcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaagaatttctc 26534506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 8323795 - 8323705
Alignment:
Q  23 ttcatgatggaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctcaa 113  Q
    |||||| ||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  8323795 ttcatggtggaaaaacaacgacgtgtcatgttttaatttattgtttgtaaagatgataggttaggttcgttcctacacaagaatttctcaa 8323705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 26534685 - 26534762
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26534685 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 26534762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 130335 - 130254
Alignment:
Q  30 tggaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||    
T  130335 tggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgacaggttaggttcgttcctacacaagaatttctc 130254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 34 - 113
Target Start/End: Original strand, 130435 - 130514
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctcaa 113  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  130435 aaaacaacgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttactacaaaagaatttctcaa 130514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 8323895 - 8323970
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttc 109  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  8323895 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttc 8323970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 791669 - 791592
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||    
T  791669 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaaaaatttctc 791592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 33377835 - 33377913
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctca 112  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||    
T  33377835 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacataagaatttctca 33377913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 42630792 - 42630711
Alignment:
Q  30 tggaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||||||| ||  |||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  42630792 tggaaaaacaatgaagtgtcatgttttagtttgttgtttgtaaggatgataggttaggttcgttcatacacaagaatttctc 42630711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 6518280 - 6518202
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctca 112  Q
    ||||||| ||||||  |||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||    
T  6518280 aaaacaatgacatgcaatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctca 6518202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 19898941 - 19899019
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctca 112  Q
    ||||||| ||||||||||||||||||||||||||| |||  |||||| |||||||||||||||||| ||||||||||||    
T  19898941 aaaacaatgacatgtcatgttttaatttgttgtttataaaaatgatatgttaggttcgttcctacacaagaatttctca 19899019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 108
Target Start/End: Original strand, 42630894 - 42630968
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaattt 108  Q
    ||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||    
T  42630894 aaaacaacgacgtgtcatattttaatttattgtttgtaaggatgataggttaggttcgtgcctacacaagaattt 42630968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 791810 - 791869
Alignment:
Q  54 tttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctcaa 113  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  791810 tttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaatttctcaa 791869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 34 - 108
Target Start/End: Original strand, 35454637 - 35454710
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaattt 108  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||    
T  35454637 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 35454710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 5146690 - 5146767
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||| ||| |||||||||||||||||||||||||||| ||||||  ||||||||||| ||||| |||||||||||    
T  5146690 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtttctacacaagaatttctc 5146767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 35454529 - 35454449
Alignment:
Q  32 gaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctcaa 113  Q
    |||||| || ||| |||||||||||||||||||||||||||| |||||| ||||||||||||| |||| |||||||||||||    
T  35454529 gaaaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctcaa 35454449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 46 - 113
Target Start/End: Original strand, 14388519 - 14388585
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctcaa 113  Q
    |||||||||||||||||||||||||||| |||||| |||||||| ||||||||| |||||||||||||    
T  14388519 tgtcatgttttaatttgttgtttgtaagaatgata-gttaggtttgttcctacacaagaatttctcaa 14388585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 8489200 - 8489123
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||| ||| |||||| ||||||||||||||||||||| |||||| ||||| || ||||||||| |||||||||||    
T  8489200 aaaacaatgacgtgtcatattttaatttgttgtttgtaagaatgatatgttagatttgttcctacacaagaatttctc 8489123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 13823335 - 13823412
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||| ||| ||||||||||||||||||| |||||||  |||||| |||| ||||||||||||| |||||||||||    
T  13823335 aaaacaatgacgtgtcatgttttaatttgttatttgtaaaaatgatatgttaagttcgttcctacacaagaatttctc 13823412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 14069925 - 14069861
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||||||||||| |||||||||||    
T  14069925 tgtcatgttttaatttgttgtttataagaatgata-gttaggttcgttcctacacaagaatttctc 14069861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 19897289 - 19897223
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctcaa 113  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||| || ||||| ||||    
T  19897289 tgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaataatttttcaa 19897223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 5146568 - 5146504
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||||||||||||| ||||||||||| |||||| |||||||||||||||||| || ||||||||    
T  5146568 tgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaataatttctc 5146504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 40881867 - 40881790
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctcaa 113  Q
    ||||||| ||| |||||||||||||||| ||||||||||| || ||  |||||||||||||||||| || ||||||||||    
T  40881867 aaaacaatgacgtgtcatgttttaatttattgtttgtaagaataat--gttaggttcgttcctacacaacaatttctcaa 40881790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 6518404 - 6518466
Alignment:
Q  48 tcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||| ||||||||||||||||||||| |||||| |||||||||||| ||||| |||||||||||    
T  6518404 tcatattttaatttgttgtttgtaagaatgata-gttaggttcgttactacacaagaatttctc 6518466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 228782 - 228729
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctaca 99  Q
    |||||||||||||||| |||||| |||| |||||| ||||||||||||||||||    
T  228782 tgtcatgttttaatttattgtttataagaatgatatgttaggttcgttcctaca 228729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 13823214 - 13823150
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||||||||| ||| |||||| || | ||||||| ||||||||||||||||| |||||||||||    
T  13823214 tgtcatgttttagtttattgtttatacgaatgatag-ttaggttcgttcctacacaagaatttctc 13823150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 40882018 - 40882066
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttc 94  Q
    |||||| ||||||||||||||||||||| |||||| ||||| |||||||    
T  40882018 tgtcatattttaatttgttgtttgtaagaatgatatgttagattcgttc 40882066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 228987 - 229044
Alignment:
Q  50 atgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaattt 108  Q
    |||||||||||||||||||||||| |||||| |||| ||||||| ||||| || |||||    
T  228987 atgttttaatttgttgtttgtaagaatgata-gttatgttcgtttctacacaaaaattt 229044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 27319668 - 27319716
Alignment:
Q  48 tcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcct 96  Q
    |||| ||||||||||||||||||||| |||||| ||||| || ||||||    
T  27319668 tcatattttaatttgttgtttgtaagaatgatatgttagattggttcct 27319716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 3102726 - 3102806
Alignment:
Q  33 aaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctcaa 113  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3102726 aaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcaa 3102806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 3102621 - 3102540
Alignment:
Q  30 tggaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3102621 tggaaaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 3102540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 9231668 - 9231579
Alignment:
Q  23 ttcatgatggaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctca 112  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||    
T  9231668 ttcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaagaatttctca 9231579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 40534150 - 40534227
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40534150 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 40534227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 13690296 - 13690216
Alignment:
Q  30 tggaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttct 110  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13690296 tggaaaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 13690216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 40534051 - 40533963
Alignment:
Q  23 ttcatgatggaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||| ||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  40534051 ttcatggtggaaaaacaacgacgtatcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaatttctc 40533963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 5121006 - 5121071
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||||||||||||||||||||||||| |||||| |||||||| ||||||||| |||||||||||    
T  5121006 tgtcatgttttaatttgttgtttgtaagaatgatatgttaggtttgttcctacacaagaatttctc 5121071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 11147079 - 11147014
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||||||||||||||||||||||||| ||||||  ||||||||||||||||| |||||||||||    
T  11147079 tgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgttcctacacaagaatttctc 11147014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 9231767 - 9231825
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgt 92  Q
    ||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||    
T  9231767 aaaacaacgacgtagcatgttttaatttgttgtttgtaaggatgataggttaggttcgt 9231825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 18381508 - 18381573
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||||||||||||||||| ||||||| |||| | |||||||||||||||||| |||||||||||    
T  18381508 tgtcatgttttaatttgttgcttgtaagaatgaaatgttaggttcgttcctacacaagaatttctc 18381573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 18936864 - 18936941
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||| ||| |||||||||||||||| ||||||||||| ||||||  ||||||||||||||| | |||||||||||    
T  18936864 aaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatattaggttcgttcctagacaagaatttctc 18936941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 37177813 - 37177890
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||| ||| | |||||||||||||||||||||||||| |||||| |||| ||||||||||| | |||||||||||    
T  37177813 aaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttatgttcgttcctagacaagaatttctc 37177890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 18936738 - 18936676
Alignment:
Q  48 tcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||||||||||||||||||||||| |||||| |||| |||||||| |||| |||||||||||    
T  18936738 tcatgttttaatttgttgtttgtaagaatgata-gttatgttcgttcatacacaagaatttctc 18936676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 11147211 - 11147285
Alignment:
Q  33 aaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaattt 108  Q
    ||||| || |||||||||| ||||||||| ||||||||||| || ||| ||||| |||||| ||||| ||||||||    
T  11147211 aaaaaaaatgacatgtcatattttaatttattgtttgtaagaataata-gttagattcgtttctacataagaattt 11147285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 42028761 - 42028844
Alignment:
Q  30 tggaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctcaa 113  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42028761 tggaaaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcaa 42028844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 42028655 - 42028577
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctca 112  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  42028655 aaaacaacgacgtgtcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaatttctca 42028577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 13280022 - 13280099
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13280022 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 13280099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 31860160 - 31860079
Alignment:
Q  30 tggaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||||| || ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  31860160 tggaaaaataatgacgtgtcatgttttaatttgttgtttataaggatgataggttaggttcgttcctacacaagaatttctc 31860079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 31860272 - 31860349
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  31860272 aaaacaacgatgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctc 31860349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 36059278 - 36059351
Alignment:
Q  38 caacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  36059278 caacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 36059351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 16115123 - 16115044
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctcaa 113  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||    
T  16115123 aaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcttacacaaaaatttctcaa 16115044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 2059671 - 2059748
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||    
T  2059671 aaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttccaacacaataatttctc 2059748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 7317716 - 7317647
Alignment:
Q  30 tggaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctaca 99  Q
    ||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  7317716 tggaaaaacaacgacgtgtcatgttttagtttgttgttagtaaggatgataggttaggttcgttcctaca 7317647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 7317834 - 7317899
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7317834 tgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 7317899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 13279901 - 13279837
Alignment:
Q  50 atgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctcaac 114  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  13279901 atgttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaagaatttctcaac 13279837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 2059571 - 2059490
Alignment:
Q  30 tggaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||||||| ||  |||||| ||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  2059571 tggaaaaacaatgaagtgtcatattttagtttgttgtttgtaaggatgataggttaggttcgttcctacccaagaatttctc 2059490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 15332849 - 15332926
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||| ||| |||||||||||||||| ||||||||||| |||||| |||||||||||||||||| |||||||||||    
T  15332849 aaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 15332926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 31470663 - 31470584
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctcaac 114  Q
    ||||||| ||| |||||||||||||||||||||||||||  |||||| |||||||||||||||||| ||||||||||||||    
T  31470663 aaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaagaatttctcaac 31470584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 16115227 - 16115308
Alignment:
Q  30 tggaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||||||| ||  |||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| || ||||||||    
T  16115227 tggaaaaacaatgaagtgtcatattttagtttgttgtttgtaagaatgataggttaggttcgttcctacacaaaaatttctc 16115308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 3671885 - 3671822
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttct 110  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||    
T  3671885 tgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttct 3671822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 38086038 - 38085967
Alignment:
Q  39 aacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||| |||||||||||||||||||||||||||| |||||| ||||| |||||||||||| |||||||||||    
T  38086038 aacgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttagtttcgttcctacacaagaatttctc 38085967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 15330505 - 15330449
Alignment:
Q  54 tttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||||| |||||||||||    
T  15330505 tttaatttattgtttgtaagaatgatag-ttaggttcgttcctacacaagaatttctc 15330449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 31470785 - 31470841
Alignment:
Q  54 tttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||||||||||||||||| |||||| |||||||||||||||||| || ||||||||    
T  31470785 tttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaaaaatttctc 31470841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 38086154 - 38086231
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||| ||| | |||| ||||||||||||||||||||| |||||| |||||||| || |||||| || ||||||||    
T  38086154 aaaacaatgacgtatcatattttaatttgttgtttgtaagaatgatatgttaggtttgtccctacacaaaaatttctc 38086231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 3672010 - 3672087
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||| ||| ||| || |||||||||||| |||||||  ||||||  |||| ||||||||| || |||||||||||    
T  3672010 aaaacaatgacgtgttatattttaatttgttatttgtaaaaatgatatattagattcgttcctccataagaatttctc 3672087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 37534 - 37445
Alignment:
Q  23 ttcatgatggaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctca 112  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||    
T  37534 ttcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaagaatttctca 37445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 37633 - 37691
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgt 92  Q
    ||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||    
T  37633 aaaacaacgacgtagcatgttttaatttgttgtttgtaaggatgataggttaggttcgt 37691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 37994796 - 37994707
Alignment:
Q  23 ttcatgatggaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctca 112  Q
    |||||| ||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37994796 ttcatggtggaaaaacaacgacgtatcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctca 37994707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 37994895 - 37994972
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37994895 aaaacaacgacgtgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 37994972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 44036902 - 44036814
Alignment:
Q  23 ttcatgatggaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||| | |||||||||    
T  44036902 ttcatggtggaaaaacaacgacgtgtcatgtttgaatttgttgtttgtaaggatgataggttaggttcgtccctacacatgaatttctc 44036814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 2814430 - 2814509
Alignment:
Q  33 aaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctca 112  Q
    |||||||| ||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||    
T  2814430 aaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctca 2814509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 41539847 - 41539770
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||||||| |||||| ||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||    
T  41539847 aaaacaacgacgtgtcatattttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 41539770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 41539963 - 41540034
Alignment:
Q  39 aacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||    
T  41539963 aacgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 41540034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 2814320 - 2814243
Alignment:
Q  33 aaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||| |||||| ||||||| |||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||    
T  2814320 aaaaaaaacgacgtgtcatgatttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 2814243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 14193524 - 14193589
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctca 112  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||    
T  14193524 tgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctca 14193589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 397192 - 397269
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||| ||| ||||||||||||||||||||||| |||| |||||| |||||||||||| ||||| |||||||||||    
T  397192 aaaacaatgacgtgtcatgttttaatttgttgtttataagaatgatatgttaggttcgtttctacacaagaatttctc 397269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 397084 - 397006
Alignment:
Q  33 aaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctca 112  Q
    ||||| ||| || ||| |||||||||||| ||||||||||| |||||| ||||||||||||||| || ||||||||||||    
T  397084 aaaaaaaacaacgtgttatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctgcacaagaatttctca 397006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 14193388 - 14193337
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttccta 97  Q
    |||||||||||||||||||||||||||  || ||| ||||||||||||||||    
T  14193388 tgtcatgttttaatttgttgtttgtaaaaataatatgttaggttcgttccta 14193337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 25101795 - 25101746
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcc 95  Q
    |||||| ||||| ||||||||||| ||| |||||||||||||||||||||    
T  25101795 tgtcatattttattttgttgtttgcaagaatgataggttaggttcgttcc 25101746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 19059455 - 19059378
Alignment:
Q  30 tggaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatt 107  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19059455 tggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 19059378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 10227789 - 10227711
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctca 112  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  10227789 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctca 10227711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 34 - 113
Target Start/End: Original strand, 26552179 - 26552258
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctcaa 113  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  26552179 aaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgatcctacacaagaatttctcaa 26552258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 10227911 - 10227976
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10227911 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 10227976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 26552078 - 26551992
Alignment:
Q  23 ttcatgatggaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttc 109  Q
    |||||| ||||||||||||||| || ||| ||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||    
T  26552078 ttcatggtggaaaaacaacgacgtgccatattttaattttttgtttgtaaggatgataggttagattcgttcctacacaagaatttc 26551992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 48871440 - 48871503
Alignment:
Q  50 atgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctcaa 113  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||    
T  48871440 atgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctcaa 48871503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 23346484 - 23346419
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||||||||||||| ||||||||||| |||||| |||||||||||||||||| |||||||||||    
T  23346484 tgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 23346419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 50893040 - 50892962
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctca 112  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||| |||| ||||||| ||||| || |||||||||    
T  50893040 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaagttcgttgctacacaaaaatttctca 50892962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 19059565 - 19059630
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctaca 99  Q
    ||||||||||  |||||| |||||||||||| ||| ||||||||||||||||||||||||||||||    
T  19059565 aaaacaacgatgtgtcatattttaatttgttctttataaggatgataggttaggttcgttcctaca 19059630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 28217718 - 28217783
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||||||| |||||||||||||||| |||||| |||||||||||||||||| || ||||||||    
T  28217718 tgtcatgttttgatttgttgtttgtaagaatgatatgttaggttcgttcctacacaataatttctc 28217783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 48752593 - 48752657
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| |||| |||||||||||    
T  48752593 tgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctc 48752657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 48871311 - 48871247
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||||||||||||||| |||||||| |||||| |||||||||||||||||| |||||||||||    
T  48871311 tgtcatgttttaatttgttatttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 48871247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 50893162 - 50893226
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||||||||||||||||||||||||  |||||| |||||||||||||||||| |||||||||||    
T  50893162 tgtcatgttttaatttgttgtttgtaataatgata-gttaggttcgttcctacacaagaatttctc 50893226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 42180635 - 42180569
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctcaa 113  Q
    |||||||||||||||||||||||||||  ||| ||| ||||||||||||||||| |||||||||||||    
T  42180635 tgtcatgttttaatttgttgtttgtaataatgctag-ttaggttcgttcctacacaagaatttctcaa 42180569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 23346607 - 23346672
Alignment:
Q  33 aaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctaca 99  Q
    ||||| || |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||    
T  23346607 aaaaaaaatgacatgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctaca 23346672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 28217607 - 28217530
Alignment:
Q  33 aaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||| || ||| |||||||||||||||||||||||||||| ||||||  ||||||||||||||||| | |||||||||    
T  28217607 aaaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-attaggttcgttcctacacaggaatttctc 28217530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 4156969 - 4156890
Alignment:
Q  33 aaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctcaa 113  Q
    ||||| || ||| |||||||||||||||| || |||||||| |||||| ||||||||| |||||||| |||||||||||||    
T  4156969 aaaaaaaatgacgtgtcatgttttaatttattatttgtaagaatgata-gttaggttccttcctacacaagaatttctcaa 4156890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 39669257 - 39669321
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttct 110  Q
    ||||||||||||||||||| |||||||| |||||| |||| ||||||| ||||| ||||||||||    
T  39669257 tgtcatgttttaatttgttctttgtaagaatgatatgttaagttcgtttctacacaagaatttct 39669321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 7062183 - 7062260
Alignment:
Q  33 aaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||| || ||| |||||| ||||||||||||||||||||  |||||| |||||||||||||||||| || ||||||||    
T  7062183 aaaaaaaatgacgtgtcatattttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaaaaatttctc 7062260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 41834075 - 41834140
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctca 112  Q
    |||||||||||||||||||||||||||  ||| || |||| ||||||||||||| ||||||||||||    
T  41834075 tgtcatgttttaatttgttgtttgtaataatgcta-gttatgttcgttcctacacaagaatttctca 41834140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 50905070 - 50904992
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatg--ataggttaggttcgttcctacagaagaatttct 110  Q
    ||||||| ||| ||||||||||||| |||||||||||||  |||  |||  ||||||||||||||||| ||||||||||    
T  50905070 aaaacaatgacgtgtcatgttttaacttgttgtttgtaaaaatgatatatattaggttcgttcctacacaagaatttct 50904992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 7062084 - 7062038
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgata 80  Q
    ||||||| ||| |||||||||||||||||||||||||||| ||||||    
T  7062084 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgata 7062038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 41833939 - 41833873
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctca 112  Q
    ||||||||||||||||||||| |||||| ||||||  |||| |||||| ||| | ||||||||||||    
T  41833939 tgtcatgttttaatttgttgtgtgtaagaatgatatattagattcgtttctatacaagaatttctca 41833873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 50905113 - 50905175
Alignment:
Q  48 tcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttct 110  Q
    |||||||||||||||||||||||||| |||||| ||||| ||||||  |||| || |||||||    
T  50905113 tcatgttttaatttgttgtttgtaagaatgatatgttagattcgtttttacacaaaaatttct 50905175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 19804885 - 19804796
Alignment:
Q  23 ttcatgatggaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctca 112  Q
    |||||| ||||||||||||||  |||| ||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  19804885 ttcatggtggaaaaacaacgatgtgtcgtgtttcaatttgttgtttgtaaggataataggttaggttcgttcctacacaagaatttctca 19804796  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 7298712 - 7298634
Alignment:
Q  34 aaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctca 112  Q
    ||||||| ||| |||||||||||||||||||||||||||  |||||| |||||||||||||||||| ||||||||||||    
T  7298712 aaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctca 7298634  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 40521215 - 40521281
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctca 112  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||    
T  40521215 tgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctca 40521281  T

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Target: chr7; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 19805605 - 19805678
Alignment:
Q  38 caacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    ||||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||| |||||||||||    
T  19805605 caacgacgtgtcatgttttaatttgttatttataaggatgataggttaagttcgttcctacacaagaatttctc 19805678  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 7298840 - 7298900
Alignment:
Q  50 atgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||    
T  7298840 atgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 7298900  T

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Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 40521080 - 40521016
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||| ||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||    
T  40521080 tgtcatattttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 40521016  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 16979604 - 16979682
Alignment:
Q  33 aaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctca 112  Q
    ||||| || ||| ||||||||||||||||||| |||||||| |||||| ||||| |||||||||||| ||||||||||||    
T  16979604 aaaaaaaatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttagattcgttcctacacaagaatttctca 16979682  T

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Target: chr7; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 28948991 - 28949069
Alignment:
Q  32 gaaaaacaacgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||| || ||| |||||||||||||||| ||||||||||| |||||| |||||||||||||||||| || ||||||||    
T  28948991 gaaaaaaaatgacgtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaaaaatttctc 28949069  T

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Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 46568021 - 46567960
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaattt 108  Q
    |||||||||||||||||||||||||||| |||||| |||| ||||||||||||| ||||||||    
T  46568021 tgtcatgttttaatttgttgtttgtaagaatgata-gttaagttcgttcctacacaagaattt 46567960  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 85
Target Start/End: Original strand, 46568157 - 46568196
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggtta 85  Q
    |||||||||||||||||||||||||||| |||||| ||||    
T  46568157 tgtcatgttttaatttgttgtttgtaagaatgatatgtta 46568196  T

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Target: scaffold0140 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 15912 - 15847
Alignment:
Q  46 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacagaagaatttctc 111  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||    
T  15912 tgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 15847  T

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