View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_high_99 (Length: 239)
Name: NF19266_high_99
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_high_99 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 46863914 - 46863689
Alignment:
| Q |
1 |
attacatgcttatcctatccatttattccttttcaaaatccaaaaatatatttattattctttttgtttgtttacactgttcttcaatatttattgtcct |
100 |
Q |
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| T |
46863914 |
attacatgcttatcctatccatttattccttttcaaaatccaaaaatatatttattattctttttgtttgtttacactgttcttcaatatttattgtcct |
46863815 |
T |
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| Q |
101 |
acataa---tattannnnnnnngtgacgggattgtcctacatattattgattgaattgaagctacaatatgaatctaatccttcatgcaaaagcaaaagt |
197 |
Q |
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|||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46863814 |
acataattttttttttttttttgtgacgggattgtcctacatattattgattgaattgaagctacaatatgaatctaatccttcatgcaaaagcaaaagc |
46863715 |
T |
|
| Q |
198 |
aaaagcaaaagcgagaacaatattct |
223 |
Q |
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|||||||||||||| ||||||||||| |
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| T |
46863714 |
aaaagcaaaagcgaaaacaatattct |
46863689 |
T |
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