View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_1 (Length: 896)
Name: NF19266_low_1
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 413 - 892
Target Start/End: Original strand, 4223192 - 4223677
Alignment:
| Q |
413 |
tattcaacatttaatcttcttttttcttatatatttgtttcttttctcaaaacttttgcggttacaactgcaaagctaagggctcagataaacctcaatt |
512 |
Q |
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| T |
4223192 |
tatttaacatttaatctt--ttttcctaatatatttgtttcttc-ctcaaaacttttgcggttaaaatagcaaagctaaggcctcagataaacctcaatt |
4223288 |
T |
|
| Q |
513 |
gtgttataa-----ctaccaaatataatctaaaaggctcatcaaattttttatgtcaatttcattacaattggttattccactcaaaattttagctgcac |
607 |
Q |
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| T |
4223289 |
atgttataaattaactaccaaatacaaactaaaaggctcatgaaattttttatgtaaatttcattacaattggttattccactcaaaattttagctgcac |
4223388 |
T |
|
| Q |
608 |
tttttatgtgctagttcacattacagcatgaccatatttaggaagcaaattagaattcaaccacaa-cacaatcaattaccactaagcttttttagcttc |
706 |
Q |
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| T |
4223389 |
tttttatgtactagttcacattacagcatgaccatatttaggaagcaaattagaattcaaccacaattacaatcaattaccactaagcttttttagcttc |
4223488 |
T |
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| Q |
707 |
atatatgtccacca--aaccgcaaaccctatcccatttctattatcatactatttattccttctttttaattaatataagaataatctagtcaatatcac |
804 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4223489 |
atatatgtccaccatcaaccgaaaaccctatcccatttctattataatactatttattccttctttttaattaatataagaaaaatctagtcaatatcac |
4223588 |
T |
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| Q |
805 |
cttaaaccacaacaaaaaaggaaaatcaaaagtgatgttaatt-aacaatatgattcacacacaatcttcaaatttgtgagaataattt |
892 |
Q |
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| T |
4223589 |
cttaaaccacaacataaaaggaaaatcaaaagtgatattaattaaacactatgattcacacacaatcttcaaatttgtgagaataattt |
4223677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 215 - 397
Target Start/End: Original strand, 4222953 - 4223146
Alignment:
| Q |
215 |
ttgatcaatcttgtttagcacaatcttaaaacttttcacagtaaccatattcatctagccacacaaatgaaattactttt-aacatgaagaaaaattcct |
313 |
Q |
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||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||| ||| ||||||||||||||| |
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| T |
4222953 |
ttgatcaatcttggttagcacaatcttaaaacttttcacggtaaccatattcatcctgcaacacaaatgaaattacttttcaacttgaagaaaaattcct |
4223052 |
T |
|
| Q |
314 |
aaaccct----------cttgaagaactaaaaatgaccgaaattattttgtaatttctaactatctttgtgctttaacatattcaacatttctt |
397 |
Q |
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| T |
4223053 |
aaatcctccataaaacgccttaagaactaaaaatgacctaaattattttgtaatttctaaccaccgtcatgctttaacatattcaacatttctt |
4223146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 4222801 - 4222913
Alignment:
| Q |
82 |
tgatgaatcatttatgaatgttgaatattgcagtaacgatccggttaatacaaatattggtttatttagtcaaacagatatttgatttatcaacgttctg |
181 |
Q |
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|||| ||||||||||||||| ||||||||| |||||| |||||||| ||| |||||||||||||||||||||| | ||||||| ||||||||| ||||| |
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| T |
4222801 |
tgataaatcatttatgaatgctgaatattgtagtaaccatccggtttatataaatattggtttatttagtcaagaaaatatttggtttatcaacattctg |
4222900 |
T |
|
| Q |
182 |
gtttataaaatgt |
194 |
Q |
| |
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||||| ||||||| |
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| T |
4222901 |
gtttagaaaatgt |
4222913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 1e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 241 - 531
Target Start/End: Complemental strand, 43002996 - 43002701
Alignment:
| Q |
241 |
taaaacttttcacagtaaccatattcatctagccacacaaatgaaattacttttaacatgaagaaaaattcctaaaccctct-------tgaagaactaa |
333 |
Q |
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||||||||||||| ||||| ||||||||| ||| ||||||||||||||||||| | ||||||||||||||||||| |||| | ||||||||| |
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| T |
43002996 |
taaaacttttcacggtaacaatattcatccagcaacacaaatgaaattactttcatcatgaagaaaaattcctaattcctccaaacgccttaagaactaa |
43002897 |
T |
|
| Q |
334 |
aaatgaccgaaattattttgtaatttctaactatctttgtgctttaacatattcaacatttcttgtaagnnnnnnnnnntattcaacatttaatcttctt |
433 |
Q |
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| T |
43002896 |
aaatgactgaaattattttgtaatttctaactaccttcgtgctttaacatattcaacatttcttgtaagaaaaaaaa---attcaaccttcaatcttctt |
43002800 |
T |
|
| Q |
434 |
tttt--cttatatatttgtttcttttctcaaaacttttgcggttacaactgcaaagctaagggctcagataaacctcaattgtgttataactaccaaata |
531 |
Q |
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|||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||| |
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| T |
43002799 |
tttttccttatatatttgtttcttc-ctcaatacttttgcggttacaactgcaaagctaaaggctcagataagcctcaattatgttataactagcaaata |
43002701 |
T |
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