View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_107 (Length: 236)
Name: NF19266_low_107
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_107 |
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Alignment Details
Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 33355443 - 33355550
Alignment:
| Q |
1 |
tctgccaagatcttcaactctcttctatcgagttggaatccctcaaaccagaaacaataggtggtgtttataaagagcttactaaaatgatttttaccac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33355443 |
tctgccaagatcttcaactctcttctatcgagttggaatccctcaaaccagaaacaataggtggtgttcataaagagcttactaaaatgatttttaccac |
33355542 |
T |
|
| Q |
101 |
acatgata |
108 |
Q |
| |
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|||||||| |
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| T |
33355543 |
acatgata |
33355550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 33544144 - 33544037
Alignment:
| Q |
1 |
tctgccaagatcttcaactctcttctatcgagttggaatccctcaaaccagaaacaataggtggtgtttataaagagcttactaaaatgatttttaccac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
33544144 |
tctgccaagatcttcaactctcttctatcgagttggaatccctcaaaccagaaacaatacgtggtgttcataaagagcttactaaaatgatttttaccac |
33544045 |
T |
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| Q |
101 |
acatgata |
108 |
Q |
| |
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|||||||| |
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| T |
33544044 |
acatgata |
33544037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 33547951 - 33547850
Alignment:
| Q |
1 |
tctgccaagatcttcaactctcttctatcgagttggaatccctcaaaccagaaacaataggtggtgtttataaagagcttactaaaatgatttttaccac |
100 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
33547951 |
tctgccaagatcttcaactatcttctatcgagttggaatccctcaaaccagaaacaata------gttcataaagagcttactaaaatgatttttaccac |
33547858 |
T |
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| Q |
101 |
acatgata |
108 |
Q |
| |
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|||||||| |
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| T |
33547857 |
acatgata |
33547850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 33546989 - 33546888
Alignment:
| Q |
1 |
tctgccaagatcttcaactctcttctatcgagttggaatccctcaaaccagaaacaataggtggtgtttataaagagcttactaaaatgatttttaccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||| ||||||||||| |
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| T |
33546989 |
tctgccaagatcttcaactctcttctatcgagttggaatccctcaaactagaaacaata------gttcataaagagcttactaaaataatttttaccac |
33546896 |
T |
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| Q |
101 |
acatgata |
108 |
Q |
| |
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|||||||| |
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| T |
33546895 |
acatgata |
33546888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 33355611 - 33355669
Alignment:
| Q |
163 |
tagacatgagttggtaggttggtggatggtttgatatttaatactataagtctactact |
221 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33355611 |
tagacatgagttggtaggttggtggatggtttgatatttaatactactagtctactact |
33355669 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 33543978 - 33543920
Alignment:
| Q |
163 |
tagacatgagttggtaggttggtggatggtttgatatttaatactataagtctactact |
221 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
33543978 |
tagacatgagttggtaggtttgtggatggtttgatatttaatactactagtctactact |
33543920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 33547791 - 33547733
Alignment:
| Q |
163 |
tagacatgagttggtaggttggtggatggtttgatatttaatactataagtctactact |
221 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||| |
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| T |
33547791 |
tagacatgagttggtaggttggtggatggtttggtatttaatactactagtccactact |
33547733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 33549682 - 33549624
Alignment:
| Q |
163 |
tagacatgagttggtaggttggtggatggtttgatatttaatactataagtctactact |
221 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||| |
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| T |
33549682 |
tagacatgagttggtaggttggtggatggtttggtatttaatactactagtccactact |
33549624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 52862493 - 52862545
Alignment:
| Q |
1 |
tctgccaa-gatcttcaactctcttctatcgagttggaatccctcaaaccaga |
52 |
Q |
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|||||||| ||| |||||||||||||||| |||||||||||||| ||| |||| |
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| T |
52862493 |
tctgccaatgatgttcaactctcttctatagagttggaatccctgaaagcaga |
52862545 |
T |
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