View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_109 (Length: 236)
Name: NF19266_low_109
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_109 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 2 - 236
Target Start/End: Complemental strand, 41581637 - 41581403
Alignment:
| Q |
2 |
gggccgaagaaagttcattccaatctattcacaaagaaacaacaaaagcatattttagacaatgaaattcctcacctgcaacagcataaggtggatatct |
101 |
Q |
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| T |
41581637 |
gggccgaagaaagttcattccaatctattcacaaagaaacaacaaaagcatattttagacaatgaaattcctcacctgcaacagcataaggtggatatct |
41581538 |
T |
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| Q |
102 |
aatttgaaaatctcatagaagccaaatcatagaatctgacacgaacaaagtactaagattagtaatcagatgtcaagtagtataaggccttagaacaatg |
201 |
Q |
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| T |
41581537 |
aatttgacaatctcatagaagccaaatcatagaatctgacacgaacaaagtactaagattagtaatcagatgtcaagtagtataaggccttagaacaatg |
41581438 |
T |
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| Q |
202 |
cattcataattatgctagctaggtatctctatttc |
236 |
Q |
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| T |
41581437 |
aattcataattatgctagctaggtatctctatttc |
41581403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 41980387 - 41980549
Alignment:
| Q |
8 |
aagaaagttcattccaatctattca-caaagaaacaacaaaagcatattttagacaatgaaattcctcacctgcaacagcataaggtgg-atatctaatt |
105 |
Q |
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||||||||||| |||||||||||| ||| |||||||||||||||||||| | ||||||||| ||||| || |||||||||||||||| |||||||||| |
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| T |
41980387 |
aagaaagttcaacccaatctattcaacaaggaaacaacaaaagcatatttgtgtcaatgaaatacctcatctacaacagcataaggtggcatatctaatt |
41980486 |
T |
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| Q |
106 |
tgaaaatctcatagaagccaaatcatagaatctgacacgaacaaagtactaagattagtaatc |
168 |
Q |
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| T |
41980487 |
tgacgatctcatagaagccaattcgtagaatctgacacaaacaaagtactaagatcagtaatc |
41980549 |
T |
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