View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19266_low_113 (Length: 229)

Name: NF19266_low_113
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19266_low_113
NF19266_low_113
[»] chr1 (24 HSPs)
chr1 (1-213)||(11903954-11904166)
chr1 (2-198)||(11881508-11881704)
chr1 (1-198)||(11904101-11904298)
chr1 (1-198)||(11904233-11904430)
chr1 (1-198)||(11904365-11904562)
chr1 (2-198)||(11904497-11904693)
chr1 (2-198)||(11881640-11881836)
chr1 (2-195)||(11890877-11891070)
chr1 (8-198)||(11881772-11881962)
chr1 (8-198)||(11891006-11891196)
chr1 (23-198)||(11904629-11904804)
chr1 (2-119)||(11881455-11881572)
chr1 (2-119)||(11890821-11890938)
chr1 (1-80)||(52819162-52819241)
chr1 (47-119)||(52819772-52819844)
chr1 (140-198)||(11904761-11904819)
chr1 (134-198)||(52819163-52819227)
chr1 (47-108)||(52819604-52819665)
chr1 (77-113)||(11879623-11879659)
chr1 (83-119)||(11882475-11882511)
chr1 (83-119)||(11891709-11891745)
chr1 (83-119)||(52818632-52818668)
chr1 (83-119)||(52818824-52818860)
chr1 (140-192)||(52819697-52819749)


Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 11904166 - 11903954
Alignment:
1 tggaggaggtgacttgtaggtatatggtggtgaataataatggaccggtggaggtggtgagttgtacttgtaaaccggtgcgggtggtggaggtgatttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
11904166 tggaggaggtgacttgtaggtatatggtggtgaataataatggactggtggaggtggggagttgtacttgtaaaccggtgcgggtggtggaggtgatttg 11904067  T
101 tagtagtaaggagttggtgccgctttcacaggaggagggggtgacttgtagtaatatggaggtgagtaataatggacgggtggaggtggtgagttgtagt 200  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
11904066 tagtagtaaggagttggtgccgctttcacagggggagggggtgacttgtagtaatatggaggtgagtaataatggacgggtggaggtggtgagttgtaga 11903967  T
201 aaggagttggtga 213  Q
    |||||||||||||    
11903966 aaggagttggtga 11903954  T

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Target: chr1; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 11881704 - 11881508
Alignment:
2 ggaggaggtgacttgtaggtatatggtggtgaataataatggaccggtggaggtggtgagttgtacttgtaaaccggtgcgggtggtggaggtgatttgt 101  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
11881704 ggaggaggtgacttataggtatatggtggtgaataataatggaccggtggagggggtgagttgtacttgtaaaccggtgcgggtggtggaggtgatttgt 11881605  T
102 agtagtaaggagttggtgccgctttcacaggaggagggggtgacttgtagtaatatggaggtgagtaataatggacgggtggaggtggtgagttgta 198  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||   ||||||||||| ||||||||||| ||||||||||||||||||||    
11881604 agtagtaaggagttggtgccgctttcacagggggaggaggtgacttgtaggtgtatggaggtgaataataatggaccggtggaggtggtgagttgta 11881508  T

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Target: chr1; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 11904298 - 11904101
Alignment:
1 tggaggaggtgacttgtaggtatatggtggtgaataataatggaccggtggaggtggtgagttgtacttgtaaaccggtgcgggtggtggaggtgatttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
11904298 tggaggaggtgacttgtaggtatatggtggtgaataataatggaccggtggaggtggggagttgtacttgtaaaccggtgcgggtggtggaggtgattta 11904199  T
101 tagtagtaaggagttggtgccgctttcacaggaggagggggtgacttgtagtaatatggaggtgagtaataatggacgggtggaggtggtgagttgta 198  Q
    |||||||||||||||||||||| ||||||||| ||||| ||||||||||||  |||||| ||||| ||||||||||| ||||||||||| ||||||||    
11904198 tagtagtaaggagttggtgccgttttcacaggtggaggaggtgacttgtaggtatatggtggtgaataataatggactggtggaggtggggagttgta 11904101  T

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Target: chr1; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 11904430 - 11904233
Alignment:
1 tggaggaggtgacttgtaggtatatggtggtgaataataatggaccggtggaggtggtgagttgtacttgtaaaccggtgcgggtggtggaggtgatttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
11904430 tggaggaggtgacttgtaggtatatggtggtgaataataatggaccggtggaggtggggagttgtacttgtaaaccggtgcgggtggtggaggtgattta 11904331  T
101 tagtagtaaggagttggtgccgctttcacaggaggagggggtgacttgtagtaatatggaggtgagtaataatggacgggtggaggtggtgagttgta 198  Q
    |||||||||||||||||||||| ||||||||| ||||| ||||||||||||  |||||| ||||| ||||||||||| ||||||||||| ||||||||    
11904330 tagtagtaaggagttggtgccgttttcacaggtggaggaggtgacttgtaggtatatggtggtgaataataatggaccggtggaggtggggagttgta 11904233  T

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Target: chr1; HSP #5
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 11904562 - 11904365
Alignment:
1 tggaggaggtgacttgtaggtatatggtggtgaataataatggaccggtggaggtggtgagttgtacttgtaaaccggtgcgggtggtggaggtgatttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
11904562 tggaggaggtgacttgtaggtatatggtggtgaataataatggaccggtggaggtggggagttgtacttgtaaaccggtgcgggtggtggaggtgattta 11904463  T
101 tagtagtaaggagttggtgccgctttcacaggaggagggggtgacttgtagtaatatggaggtgagtaataatggacgggtggaggtggtgagttgta 198  Q
    |||||||||||||||||||||| ||||||||| ||||| ||||||||||||  |||||| ||||| ||||||||||| ||||||||||| ||||||||    
11904462 tagtagtaaggagttggtgccgttttcacaggtggaggaggtgacttgtaggtatatggtggtgaataataatggaccggtggaggtggggagttgta 11904365  T

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Target: chr1; HSP #6
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 11904693 - 11904497
Alignment:
2 ggaggaggtgacttgtaggtatatggtggtgaataataatggaccggtggaggtggtgagttgtacttgtaaaccggtgcgggtggtggaggtgatttgt 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
11904693 ggaggaggtgacttgtaggtatatggtggtgaataataatggaccggtggaggtggggagttgtacttgtaaaccggtgcgggtggtggaggtgatttat 11904594  T
102 agtagtaaggagttggtgccgctttcacaggaggagggggtgacttgtagtaatatggaggtgagtaataatggacgggtggaggtggtgagttgta 198  Q
    ||||||||||||||||||||| ||||||||| ||||| ||||||||||||  |||||| ||||| ||||||||||| ||||||||||| ||||||||    
11904593 agtagtaaggagttggtgccgttttcacaggtggaggaggtgacttgtaggtatatggtggtgaataataatggaccggtggaggtggggagttgta 11904497  T

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Target: chr1; HSP #7
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 11881836 - 11881640
Alignment:
2 ggaggaggtgacttgtaggtatatggtggtgaataataatggaccggtggaggtggtgagttgtacttgtaaaccggtgcgggtggtggaggtgatttgt 101  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
11881836 ggaggaggtgacttgtaggtatatggaggtgaataataatggaccggtggaggtggggagttgtacttgtaaaccggtgcgggaggtggaggtgatttgt 11881737  T
102 agtagtaaggagttggtgccgctttcacaggaggagggggtgacttgtagtaatatggaggtgagtaataatggacgggtggaggtggtgagttgta 198  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||| |||  |||||| ||||| ||||||||||| |||||||| |||||||||||    
11881736 agtagtaaggagttggtgccgctttcacagggggaggaggtgacttataggtatatggtggtgaataataatggaccggtggagggggtgagttgta 11881640  T

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Target: chr1; HSP #8
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 11891070 - 11890877
Alignment:
2 ggaggaggtgacttgtaggtatatggtggtgaataataatggaccggtggaggtggtgagttgtacttgtaaaccggtgcgggtggtggaggtgatttgt 101  Q
    |||||||||||||| ||||| ||||| |||||||| |||||||| || |||||||| ||||||||||||||||| |||||||| ||||||||||||||||    
11891070 ggaggaggtgacttataggtgtatggaggtgaatagtaatggactggcggaggtggggagttgtacttgtaaactggtgcgggaggtggaggtgatttgt 11890971  T
102 agtagtaaggagttggtgccgctttcacaggaggagggggtgacttgtagtaatatggaggtgagtaataatggacgggtggaggtggtgagtt 195  Q
    |||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
11890970 agtagtaaggagttggtgccgctttcacggggggaggaggtgacttgtagtaatatggaggtgagtaataatggacgggtggaggtggtgagtt 11890877  T

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Target: chr1; HSP #9
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 8 - 198
Target Start/End: Complemental strand, 11881962 - 11881772
Alignment:
8 ggtgacttgtaggtatatggtggtgaataataatggaccggtggaggtggtgagttgtacttgtaaaccggtgcgggtggtggaggtgatttgtagtagt 107  Q
    ||||||||||||   |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
11881962 ggtgacttgtagtagtatggtggagaataataatggaccggtggaggtggtgagttgtacttgtaaaccggtgcgggtggtggaggtgatttgtagtagt 11881863  T
108 aaggagttggtgccgctttcacaggaggagggggtgacttgtagtaatatggaggtgagtaataatggacgggtggaggtggtgagttgta 198  Q
    |||||||||||||| |||||||||| ||||| ||||||||||||  |||||||||||| ||||||||||| ||||||||||| ||||||||    
11881862 aaggagttggtgccactttcacagggggaggaggtgacttgtaggtatatggaggtgaataataatggaccggtggaggtggggagttgta 11881772  T

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Target: chr1; HSP #10
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 8 - 198
Target Start/End: Complemental strand, 11891196 - 11891006
Alignment:
8 ggtgacttgtaggtatatggtggtgaataataatggaccggtggaggtggtgagttgtacttgtaaaccggtgcgggtggtggaggtgatttgtagtagt 107  Q
    ||||||||||||   |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
11891196 ggtgacttgtagtagtatggtggagaataataatggaccggtggaggtggtgagttgtacttgtaaaccggtgcgggaggtggaggtgatttgtagtagt 11891097  T
108 aaggagttggtgccgctttcacaggaggagggggtgacttgtagtaatatggaggtgagtaataatggacgggtggaggtggtgagttgta 198  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||   ||||||||||| || |||||||| || |||||||| ||||||||    
11891096 aaggagttggtgctgctttcacaggaggaggaggtgacttataggtgtatggaggtgaatagtaatggactggcggaggtggggagttgta 11891006  T

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Target: chr1; HSP #11
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 11904804 - 11904629
Alignment:
23 tatggtggtgaataataatggaccggtggaggtggtgagttgtacttgtaaaccggtgcgggtggtggaggtgatttgtagtagtaaggagttggtgccg 122  Q
    ||||| || |||||||||||||| |||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||      
11904804 tatggaggagaataataatggactggtggaggaggtgagttgtacttataaaccggtgcaggaggtggaggtgatttgtagtagtatggagttggtgcta 11904705  T
123 ctttcacaggaggagggggtgacttgtagtaatatggaggtgagtaataatggacgggtggaggtggtgagttgta 198  Q
    |||||||||| ||||| ||||||||||||  |||||| ||||| ||||||||||| ||||||||||| ||||||||    
11904704 ctttcacagggggaggaggtgacttgtaggtatatggtggtgaataataatggaccggtggaggtggggagttgta 11904629  T

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Target: chr1; HSP #12
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 11881572 - 11881455
Alignment:
2 ggaggaggtgacttgtaggtatatggtggtgaataataatggaccggtggaggtggtgagttgtacttgtaaaccggtgcgggtggtggaggtgatttgt 101  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| ||||||||||||||||    
11881572 ggaggaggtgacttgtaggtgtatggaggtgaataataatggaccggtggaggtggtgagttgtatttgtaaactggtgagggaggtggaggtgatttgt 11881473  T
102 agtagtaaggagttggtg 119  Q
    ||||||||||||||||||    
11881472 agtagtaaggagttggtg 11881455  T

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Target: chr1; HSP #13
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 11890938 - 11890821
Alignment:
2 ggaggaggtgacttgtaggtatatggtggtgaataataatggaccggtggaggtggtgagttgtacttgtaaaccggtgcgggtggtggaggtgatttgt 101  Q
    ||||||||||||||||||  |||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||| |||| ||| ||||||||||||||||    
11890938 ggaggaggtgacttgtagtaatatggaggtgagtaataatggacgggtggaggtggtgagttatacttgtaaactggtgagggaggtggaggtgatttgt 11890839  T
102 agtagtaaggagttggtg 119  Q
    ||||||||||||||||||    
11890838 agtagtaaggagttggtg 11890821  T

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Target: chr1; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 52819162 - 52819241
Alignment:
1 tggaggaggtgacttgtaggtatatggtggtgaataataatggaccggtggaggtggtgagttgtacttgtaaaccggtg 80  Q
    |||||| |||||||| |||   |||||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||    
52819162 tggaggtggtgacttatagtagtatggtggagaataataatggacaggtggaggtggtgacttgtacttgtaaactggtg 52819241  T

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Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 52819772 - 52819844
Alignment:
47 ggtggaggtggtgagttgtacttgtaaaccggtgcgggtggtggaggtgatttgtagtagtaaggagttggtg 119  Q
    |||||||||||||| |||||  | ||||||||||  || || |||||||| ||||||||||||||||||||||    
52819772 ggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgacttgtagtagtaaggagttggtg 52819844  T

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Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 11904819 - 11904761
Alignment:
140 ggtgacttgtagtaatatggaggtgagtaataatggacgggtggaggtggtgagttgta 198  Q
    |||||||| ||||| |||||||| || ||||||||||| |||||||| |||||||||||    
11904819 ggtgacttatagtagtatggaggagaataataatggactggtggaggaggtgagttgta 11904761  T

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Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 52819163 - 52819227
Alignment:
134 ggagggggtgacttgtagtaatatggaggtgagtaataatggacgggtggaggtggtgagttgta 198  Q
    ||||| |||||||| ||||| ||||| || || ||||||||||| |||||||||||||| |||||    
52819163 ggaggtggtgacttatagtagtatggtggagaataataatggacaggtggaggtggtgacttgta 52819227  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 52819604 - 52819665
Alignment:
47 ggtggaggtggtgagttgtacttgtaaaccggtgcgggtggtggaggtgatttgtagtagta 108  Q
    |||||||||||||| |||||||||||||  ||||  || || |||||||| |||||||||||    
52819604 ggtggaggtggtgaattgtacttgtaaattggtgttggaggaggaggtgacttgtagtagta 52819665  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 11879659 - 11879623
Alignment:
77 ggtgcgggtggtggaggtgatttgtagtagtaaggag 113  Q
    |||| |||||||||||| |||||||||||||||||||    
11879659 ggtgagggtggtggaggagatttgtagtagtaaggag 11879623  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 11882511 - 11882475
Alignment:
83 ggtggtggaggtgatttgtagtagtaaggagttggtg 119  Q
    |||||||||||||||||||| |||||||||| |||||    
11882511 ggtggtggaggtgatttgtaatagtaaggaggtggtg 11882475  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 11891745 - 11891709
Alignment:
83 ggtggtggaggtgatttgtagtagtaaggagttggtg 119  Q
    |||||||||||||||||||| |||||||||| |||||    
11891745 ggtggtggaggtgatttgtaatagtaaggaggtggtg 11891709  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 52818632 - 52818668
Alignment:
83 ggtggtggaggtgatttgtagtagtaaggagttggtg 119  Q
    |||||||||||||||||||||||||| |||| |||||    
52818632 ggtggtggaggtgatttgtagtagtagggaggtggtg 52818668  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 52818824 - 52818860
Alignment:
83 ggtggtggaggtgatttgtagtagtaaggagttggtg 119  Q
    ||||||||||||||||||||||| ||||||| |||||    
52818824 ggtggtggaggtgatttgtagtaataaggaggtggtg 52818860  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 52819697 - 52819749
Alignment:
140 ggtgacttgtagtaatatggaggtgagtaataatggacgggtggaggtggtga 192  Q
    ||||||||||| ||||||||||| || || | |||||| ||||||||||||||    
52819697 ggtgacttgtaataatatggaggagaatattgatggacaggtggaggtggtga 52819749  T

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