View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_116 (Length: 226)
Name: NF19266_low_116
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_116 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 41929095 - 41929291
Alignment:
| Q |
21 |
atggcaactcaagtggtggaagctttgatgttatggcttttcttaatagtgatgactgatatcatttccttaagtgatgtacatggcagtattggaaaga |
120 |
Q |
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| T |
41929095 |
atggcaactcaagtgatggaagctttgatgttatggcttttcttaataatgatgactaatatcatttccttaagtgatgtacatggcagtattggaaaga |
41929194 |
T |
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| Q |
121 |
caatgctagagttgtgaaatttgcatgaagtttaaataatactgataaggtacaaaatgtagtgatgagagtattattgctagtttgctaggttttc |
217 |
Q |
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| T |
41929195 |
caatgctagagttgtgaaatttgcatgaagtttaaataatactgataaggtacaaaatgtagtgatgagagtattattgctagtttgctaggttttc |
41929291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 176
Target Start/End: Original strand, 41911346 - 41911508
Alignment:
| Q |
21 |
atggcaactcaagtggtggaagctttgatgttatggcttttcttaatagtgatgactgatatcatttcctt-------aagtgatgtacatggcagtatt |
113 |
Q |
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| T |
41911346 |
atggcaactcaagtgatggaagctttgatgtttttgcttttcttaatagtgatgactgatatcacttctttgatatataagtgaggtacatgacaatatt |
41911445 |
T |
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| Q |
114 |
ggaaagacaatgctagagttgtgaaatttgcatgaagtttaaataatactgataaggtacaaa |
176 |
Q |
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| T |
41911446 |
ggaaagagaatgctagagttgtgacatttgcatgaaatttaaataatactaataaagtacaaa |
41911508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 168
Target Start/End: Original strand, 41938322 - 41938479
Alignment:
| Q |
21 |
atggcaactcaagtggtggaagctttgatgttatggcttttcttaatagtgatgactgatatcatttcctt----------aagtgatgtacatggcagt |
110 |
Q |
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| T |
41938322 |
atggcaactcaagtgatggaagctttgatgtttttgcttttcttaatagtgatgactgatatcacttctttgataatatataagtgaggtacatgacagt |
41938421 |
T |
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| Q |
111 |
attggaaagacaatgctagagttgtgaaatttgcatgaagtttaaataatactgataa |
168 |
Q |
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| T |
41938422 |
attggtaagagaatgctagagttgtgatatttgcatgaagtttaaataatactgataa |
41938479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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