View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_12 (Length: 495)
Name: NF19266_low_12
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 129 - 495
Target Start/End: Complemental strand, 34142580 - 34142214
Alignment:
| Q |
129 |
tactggattctgtctcacggataactctgttcgattgtagagttgccaaagccaaatgttatcaagggagagattaatcaagatattaaaagtcactttg |
228 |
Q |
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| T |
34142580 |
tactggattctgtctcacggataactctgttcgattgtagagttgccaaagccaaatgttattaagggagagattaatcaagatattaaaagtcactttg |
34142481 |
T |
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| Q |
229 |
aaactgcagccactatctcctgtgaggtgctcactcataatgactattaaattaaccgtccctctttgagcttgtttatacattattatatagtttatac |
328 |
Q |
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| T |
34142480 |
aaactgcagccactatctcctgtgaggtgctcactcataatgactattaaattaaccgtccctctttgagcttgtttatacattattatatagtttatac |
34142381 |
T |
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| Q |
329 |
aattaattgattttgcctcacaaactgggtttttggtagcaagattatggttgcaaatgagtagagctagttcaatgatttttgaatgcttgttattttc |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34142380 |
aattaattgattttgcctcacaaactgggtttttggtagcaagattatggttgcaaatgcgtagagctagttcaatgatttttgaatgcttgttattttc |
34142281 |
T |
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| Q |
429 |
catctgatcaaatgctaagttgctaacatgttttgcatattgatatttgtggttttcagaacaccag |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34142280 |
catctgatcaaatgctaagttgctaacatgttttgcatattgatatttgtggttttcagaacaccag |
34142214 |
T |
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